rs225137259 SNP Detail

Summary

• ID
  rs225137259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:43113838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTGCTCT CCTCGCAGAC
  CTCTGGACAA GTCTGTGCTG TGTGAATATG CTTCCTTCCT AGAAGAAAGA GCCTGTGGGT
  GGGGATAAGA GCAAAGGCAG GGACCAGAGC TCACCTTGTC TGAAGGAGGA GGTCTAAGCT
  GGACTCTTAG GTCTGAGAGA GGCCTGGACC TCACTTAGGT GTGACGGGGG AGGGCTAGGG
  Y
  CTGAATCCGT GGGACCGAGG GAATTAAGAC TGGGGTTTGG ACTCAGGTCT GAAGGAGGAG
  GATTGAAGTC TGAACCCCTG GGTTTGAGGG AAGAGGGGGT GGGTCTTGAC CTCAGAGTCT
  GAAGGAGGGC TGGAGTCTGG AGTCCTCAGA CTGATGGAAT AAGATTGGGG TTTGGACACC
  TAAGTTTGCG GGCTGAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371132450	MGP_WTSI_7_50719784	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225137259					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371132450	MGP_WTSI_7_50719784	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43113838 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18932	CpG island 18932			417 bp proximal
Cpgi18933	CpG island 18933			1748 bp proximal
Etfbl	electron transferring flavoprotein, beta polypeptide like			827 bp downstream
Gm39000	predicted gene, 39000			within coordinates
Rr400282	regulatory region 400282			1316 bp upstream
Rr645966	regulatory region 645966			429 bp proximal
Rr645967	regulatory region 645967			1094 bp proximal
Rr645968	regulatory region 645968			1156 bp proximal
Rr645969	regulatory region 645969			1164 bp proximal
Rr645970	regulatory region 645970			1856 bp proximal
Tssr66006	transcription start site region 66006			1301 bp downstream
Tssr66007	transcription start site region 66007			1229 bp downstream
Tssr66008	transcription start site region 66008			1199 bp downstream
Tssr66009	transcription start site region 66009			1188 bp downstream
Tssr66010	transcription start site region 66010			1594 bp upstream
Tssr72134	transcription start site region 72134			162 bp upstream
Tssr72135	transcription start site region 72135			1149 bp downstream
Vsig10l	V-set and immunoglobulin domain containing 10 like			Intron
				Noncoding-Transcript-Variant