rs225138283 SNP Detail

Summary

• ID
  rs225138283
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53859233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGTTGATG AGCTAAAGGT TGTATTAGCT
  TTTTATTTTC TCGGTAAACT TATCTATTCT CTGGGAAGAG GGGGAGAAAA AAAAGGAATG
  TACATTCCCG GAGAAGAAGA AAACAGGTCT CACCCACCTC CCCCGTTCTA GTAAAGATCT
  M
  TGTAAACACT GCCCTGGAAA CTGGAGGCAG GGGGATTCAG GACAGGGAAT GAGAAAATAA
  AATGTAAACA TAAAACAGGC ACAGGCCTAA AAGTAAAACG GCCTGCGGGT CTACTGGGGA
  ACACCACTCT CCAGCCAAGG GAACCCGGCT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324044495	CHEV_12_54913437	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225138283					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53859233 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	768 bp proximal
Rr267638	regulatory region 267638	within coordinates