rs225139820 SNP Detail

Summary

• ID
  rs225139820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30824110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGCATCA ACTCATTCAG
  CCCTCACACA GACCTAGGGA GTTGAAGCCA GCGAGATGGC TTAGCAAGTG AAGGTGCTTG
  CCACCACTCT GGCAGCCTGG CTTCGATCCT TAGGACCCGT GTGGTGAAAT GACAGAATGG
  ACTTCTTCAA CTTGTCTTCT AACCTCCATA CACACGCCAT GGCATGTACA CACACACACA
  Y
  ACTCTAAAAA TAAATGTAGT GACCTAAAAT TATGGAGTAG CGACCATGCC CCCTCACTGG
  GGACATGTGC TCTGTGCCTT GCCTAAGGTG GTCAGCAGTC TGTGGTGCTC TAAATCCAGG
  TCATCCAGCG TATCACATCC TCATCATTAG CAATGCACTC AGACAAGCCA ATCGCATGTC
  TGTAATCCCA GCACTCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
ss370923165	MGP_WTSI_7_31909704	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	T	T	T	T	T	T	T	C	C	C	C	T	T	T	T	T	T	C	C	C	C	C	T	T	T	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
rs225139820					SNP	C	C	C	T	T	T	T	T	T	T	T	C	C	C	C	T	T	T	T	T	T	C	C	C	C	C	T	T	T	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370923165	MGP_WTSI_7_31909704	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30824110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	431 bp proximal
Cpgi18837	CpG island 18837	1509 bp proximal
Rr645025	regulatory region 645025	1171 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates