rs225146269 SNP Detail

Summary

• ID
  rs225146269
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:120881264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGGGCC CTGGCCTGCA
  GCTGGAGAGC TCCGGAAGCT GGGTACCTTT GGGACCTGAG CTGGTGCAGA AGGATGTTCC
  GGACTGTCTC ATCCTCAAAG TTGTAATTGA CTGTCCAGTA GACACACAGC TCTGTCGGCC
  GCTGGATAAG TCGCAGCACG GTCCTGACGC CTTGTGCCAT GTCGAAGTCT TCAGCTTGGC
  M
  GCCCTGTTCC CAGGCATACA CAGTGAGCAG TTCCAGTGCG TACAGCAATG GCTGAGGTGG
  GGGTGTTTTC CACTTCTCCT GGCACTGGGA CAGAAGACGA GACCATCAGG AAGCCATCAG
  AAAGAGCATC CCCCACACCT GCAAGTCACT GTGTCTGTAT GGTCTGATAC TGGTGAAGGT
  GTAGAAGAAA CACCTGGAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366481612	MGP_WTSI_5_121193208	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225146269					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366481612	MGP_WTSI_5_121193208	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:120881264 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Oas2	2'-5' oligoadenylate synthetase 2			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr619422	regulatory region 619422			781 bp distal
Rr619423	regulatory region 619423			867 bp distal
Rr619424	regulatory region 619424			694 bp distal
Tssr52959	transcription start site region 52959			357 bp downstream
Tssr52960	transcription start site region 52960			443 bp downstream
Tssr52961	transcription start site region 52961			470 bp downstream
Tssr52962	transcription start site region 52962			592 bp downstream
Tssr52963	transcription start site region 52963			689 bp downstream
Tssr52964	transcription start site region 52964			940 bp downstream
Tssr52965	transcription start site region 52965			1027 bp downstream
Tssr52966	transcription start site region 52966			1098 bp downstream
Tssr52967	transcription start site region 52967			1124 bp downstream