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rs225149835 SNP Detail
Summary
  • ID
    rs225149835
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:19429672 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCCTTTCTC AGTTCCTGTA
GAGATTGATT TGAAAACAAA GATTCAAATA TTCAAGACCA AACTAGGCTA GAGGGAGTGC
AAGGAAAATC AGTTGAGATC CTATTTCAGA CTAAAAAGAA GGGTGGATAT AGCTAAATAG
AAGAGCCTGT ACTGGGTGCT GGAGAGATGG CTCAGCAGTT AAGAGCACTG ACTACTCTTC
Y
ATAAGTCCTG AGTTCAATTC CCAGCAACCA CATGGTGGCT CACAACCATC TGTAATGGGA
CCTGACGCCT GAAGACAGCT GCAGTGTACC TTATACATAA GATAAACAAA TCTTAAATAA
ATAAATAAAT AAAATGAGCC CATGCCTAGA ATCCAGGGGT AGGGGGCGGT GAAGAGCCCC
AGAGGCTGTG GGTGTGGCTC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370754781 MGP_WTSI_7_20281096 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225149835 SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370754781 MGP_WTSI_7_20281096 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19429672 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E 362 bp downstream
Cpgi18507 CpG island 18507 774 bp proximal
Gm71725 predicted gene, 71725 1371 bp upstream
Rr643239 regulatory region 643239 211 bp distal
Rr643240 regulatory region 643240 704 bp proximal
Rr643241 regulatory region 643241 889 bp proximal
Tssr2112 transcription start site region 2112 704 bp upstream
Tssr2113 transcription start site region 2113 729 bp upstream
Tssr2114 transcription start site region 2114 844 bp upstream
Tssr2115 transcription start site region 2115 880 bp upstream
Tssr2116 transcription start site region 2116 955 bp upstream
Tssr2117 transcription start site region 2117 977 bp upstream
Tssr2118 transcription start site region 2118 1084 bp upstream
Tssr2119 transcription start site region 2119 1093 bp downstream
Tssr2120 transcription start site region 2120 1156 bp upstream
Tssr2121 transcription start site region 2121 1188 bp upstream
Tssr2122 transcription start site region 2122 1908 bp downstream
Tssr64880 transcription start site region 64880 521 bp upstream
Tssr64881 transcription start site region 64881 573 bp upstream
Tssr64882 transcription start site region 64882 617 bp upstream
Tssr64883 transcription start site region 64883 655 bp upstream
Tssr64884 transcription start site region 64884 682 bp upstream
Tssr64885 transcription start site region 64885 761 bp upstream
Tssr64886 transcription start site region 64886 782 bp upstream
Tssr64887 transcription start site region 64887 814 bp upstream
Tssr64888 transcription start site region 64888 1033 bp upstream
Tssr64889 transcription start site region 64889 1127 bp upstream
Tssr64890 transcription start site region 64890 1173 bp upstream
Tssr64891 transcription start site region 64891 1196 bp upstream
Tssr64892 transcription start site region 64892 1229 bp upstream
Tssr64893 transcription start site region 64893 1264 bp upstream
Tssr64894 transcription start site region 64894 1718 bp upstream
Tssr64895 transcription start site region 64895 1814 bp upstream
Tssr64896 transcription start site region 64896 1840 bp upstream
Tssr70973 transcription start site region 70973 545 bp downstream
Tssr70974 transcription start site region 70974 591 bp downstream
Tssr70975 transcription start site region 70975 619 bp downstream
Tssr70976 transcription start site region 70976 654 bp downstream
Tssr70977 transcription start site region 70977 702 bp downstream
Tssr70978 transcription start site region 70978 717 bp downstream
Tssr70979 transcription start site region 70979 741 bp downstream
Tssr70980 transcription start site region 70980 751 bp downstream
Tssr70981 transcription start site region 70981 772 bp downstream
Tssr70982 transcription start site region 70982 786 bp downstream
Tssr70983 transcription start site region 70983 819 bp downstream
Tssr70984 transcription start site region 70984 836 bp downstream
Tssr70985 transcription start site region 70985 901 bp downstream
Tssr70986 transcription start site region 70986 934 bp downstream
Tssr70987 transcription start site region 70987 964 bp downstream
Tssr70988 transcription start site region 70988 1008 bp downstream
Tssr70989 transcription start site region 70989 1047 bp downstream
Tssr70990 transcription start site region 70990 1059 bp downstream
Tssr70991 transcription start site region 70991 1104 bp downstream
Tssr70992 transcription start site region 70992 1112 bp downstream
Tssr70993 transcription start site region 70993 1121 bp downstream
Tssr70994 transcription start site region 70994 1162 bp downstream
Tssr70995 transcription start site region 70995 1167 bp downstream
Tssr70996 transcription start site region 70996 1200 bp downstream
Tssr70997 transcription start site region 70997 1234 bp downstream
Tssr70998 transcription start site region 70998 1296 bp downstream
Tssr70999 transcription start site region 70999 1314 bp downstream
Tssr71000 transcription start site region 71000 1757 bp downstream
Tssr71001 transcription start site region 71001 1787 bp downstream
Tssr71002 transcription start site region 71002 1847 bp downstream
Tssr71003 transcription start site region 71003 1865 bp downstream
Tssr71004 transcription start site region 71004 1893 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory