rs225158022 SNP Detail

Summary

• ID
  rs225158022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98304953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATACCCCG ACTACCACAG
  AAAGCCTCCT AGGAGATCTA GAAGAGCGGG AGCTCTTGGA TCTATTTAGG GCACTAGACA
  AAGAGACAGG CAGAGACGGT AAACTAACTG ACTAGTGTGC TGTGTGCTCA GCAAACCAGC
  TCAGAGTAAA GGTCGAGAGA CCAGGAGATG GCCAAAGTGG TCAGGGGAAG AAGGAGTGGC
  Y
  AGAGCTGTGT CCTCCCTGAT GAATAGCAGA GACCTGGAGC AACCTCTGTC CAGAACATAA
  GGATCCACTC TCAGCTCAGC AACAGACCAG GGCTTACTGT CCCTACTGTG TGTCAAGCAC
  TACATGAGAC TTTGGCATAA ACCATCTCAG GAGGTTCATC TCAGGGCACA AAGGGAAGTG
  GCTGGAGAGG ATGAAGGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323129369	CHEV_9_98323319	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225158022					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98304953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	1764 bp proximal
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	526 bp proximal
Rbp1	retinol binding protein 1, cellular	61 bp upstream
Rr685255	regulatory region 685255	538 bp distal
Rr685256	regulatory region 685256	within coordinates
Rr685257	regulatory region 685257	72 bp proximal
Tssr86646	transcription start site region 86646	1879 bp upstream
Tssr86647	transcription start site region 86647	1962 bp upstream