rs225158952 SNP Detail

Summary

• ID
  rs225158952
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:120152860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAGCCA GGCCCGGTCT
  AAGGAAGAGT CCAGATGTCA GGCAGTGCTG GCCAGACCCG AAGGATCTGT CCCTCAAAGT
  AGGGTGGGAG CCAAGAAAAG AGCCGCACAC CAAGGGTATG TTCTGGTTCA TTTATGCCGG
  CACTGAGAGG AGGCACTGCT TAATTGGGGG GAGGGGGTGG ACAGCAGGAA GAGGCTAAAA
  M
  CAAGAGATGA GGGTCTGACC GAAGTCCTCC AGGGGCTAGG CATTCCCTCC CCGGATGCAC
  ACACTTCACC CCACCTTCTT GGGCCCCTTC TTCCCACAAT GATCCCAGAG GAGGCATGCA
  CTCCAGAGTG GGGCCAAGGG ACACACGATA CTGGCTGTGC CTTGGTCTGC AGCTGCATGC
  AGAAATGGCT GTCCTCTCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376245697	MGP_WTSI_8_121950021	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225158952					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376245697	MGP_WTSI_8_121950021	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:120152860 () rs orientation: forward

Symbol	Name	Function Class
Gm32006	predicted gene, 32006	within coordinates
Gm56837	predicted gene, 56837	752 bp downstream
Gm64145	predicted gene, 64145	1604 bp upstream
Rr401165	regulatory region 401165	1967 bp upstream
Rr671123	regulatory region 671123	1794 bp distal
Rr671124	regulatory region 671124	1272 bp distal
Rr671125	regulatory region 671125	1327 bp distal
Rr671126	regulatory region 671126	within coordinates
Rr671127	regulatory region 671127	1463 bp proximal
Rr671128	regulatory region 671128	1615 bp proximal
Tssr79689	transcription start site region 79689	1640 bp downstream
Tssr79690	transcription start site region 79690	190 bp downstream
Tssr79691	transcription start site region 79691	163 bp downstream
Tssr83118	transcription start site region 83118	1778 bp upstream
Tssr83119	transcription start site region 83119	1759 bp upstream
Tssr83120	transcription start site region 83120	1119 bp upstream
Tssr83121	transcription start site region 83121	459 bp downstream