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rs225161536 SNP Detail
Summary
  • ID
    rs225161536
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr15:44292371 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      AACCTGACT TTTAAATGGC AAAAATGCGC
    TCAAAAGTTA ACCTTGCTTT TTTTTTTTTT CCCCTACACC TATTTTGGCA TTGGTTGTCT
    GTTTTTTATT GAAAATGAAG AATTTCTCAA AGACTAGTTT GAAATTCGTT TTCTTACTTA
    Y
    CCTTCAGAAA TAAGGATATG AAATCCAAAG CTAGGGTAGC AGTTGTAATT CTCCGTGAAG
    TTTATTGGGT AAAGCAAGCA CATAGTCTTA TTTCATTTTT CATAGTCGTA TCTTTTATTA
    GTGTGCATGC TATGGCTTAC CCAGAAATTG                                 
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss324945881 CHEV_15_44260521 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs225161536 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:44292371 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi7073 CpG island 7073 377 bp distal
Eny2 ENY2 transcription and export complex 2 subunit within coordinates
Nudcd1 NudC domain containing 1 668 bp upstream
Rr311712 regulatory region 311712 within coordinates
Rr404372 regulatory region 404372 886 bp downstream
Tssr131224 transcription start site region 131224 1562 bp downstream
Tssr131225 transcription start site region 131225 801 bp downstream
Tssr134195 transcription start site region 134195 1162 bp upstream
Tssr134196 transcription start site region 134196 1063 bp upstream
Tssr134197 transcription start site region 134197 638 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory