rs225161536 SNP Detail

Summary

• ID
  rs225161536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:44292371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACCTGACT TTTAAATGGC AAAAATGCGC
  TCAAAAGTTA ACCTTGCTTT TTTTTTTTTT CCCCTACACC TATTTTGGCA TTGGTTGTCT
  GTTTTTTATT GAAAATGAAG AATTTCTCAA AGACTAGTTT GAAATTCGTT TTCTTACTTA
  Y
  CCTTCAGAAA TAAGGATATG AAATCCAAAG CTAGGGTAGC AGTTGTAATT CTCCGTGAAG
  TTTATTGGGT AAAGCAAGCA CATAGTCTTA TTTCATTTTT CATAGTCGTA TCTTTTATTA
  GTGTGCATGC TATGGCTTAC CCAGAAATTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324945881	CHEV_15_44260521	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225161536					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:44292371 () rs orientation: forward

Symbol	Name	Function Class
Eny2	ENY2 transcription and export complex 2 subunit	Intron
Nudcd1	NudC domain containing 1	668 bp upstream
Rr404372	regulatory region 404372	886 bp downstream
Rr501808	regulatory region 501808	854 bp distal
Rr501809	regulatory region 501809	679 bp distal
Rr501810	regulatory region 501810	178 bp distal
Tssr131224	transcription start site region 131224	1562 bp downstream
Tssr131225	transcription start site region 131225	801 bp downstream
Tssr134195	transcription start site region 134195	1162 bp upstream
Tssr134196	transcription start site region 134196	1063 bp upstream
Tssr134197	transcription start site region 134197	638 bp upstream