rs225167923 SNP Detail

Summary

• ID
  rs225167923
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127127425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCAGCCG GGGTTGCTTC
  CACACCACAG GTCAGAAATG GAGATGGGAA GACGAGGAAG CCACATGCAG GCACACGCGC
  GGGATGCCAA CCCCCCGGGG GGGGGAGGAC ATCCTCACTC ACCCAAGTTT TCCTCCACTA
  GTTAATCTAG CAAGGGACAG AATTAGCGTC TCGCCCAAGG GTGCGGGGCT ACCTCGCGCA
  S
  GAGCGGGGGA GGCCAGCGCA GGGGTAGTTC TCCCGCAGTT TTTAGGATCT CTGCGTGTTG
  GAGGTAGGGA TGGAGCGGCT GGGCTTGCCT CTCCCTGAGA GCGTCGCCCG CACACCTACC
  TCTAGCATCC AGGTGGCCAC CATCCTGCGC ATGTACGGTT GGATGTCCTT CTGCACGCAC
  TTGAAATAGG AACACTGCGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369997136	MGP_WTSI_6_127100480	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225167923					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369997136	MGP_WTSI_6_127100480	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127127425 () rs orientation: forward

Symbol	Name	Function Class
9330179D12Rik	RIKEN cDNA 9330179D12 gene	within coordinates
Ccnd2	cyclin D2	within coordinates
Cpgi18033	CpG island 18033	901 bp distal
Cpgi18034	CpG island 18034	within coordinates
Cpgi18035	CpG island 18035	1173 bp proximal
Rr145781	regulatory region 145781	within coordinates
Rr399942	regulatory region 399942	1975 bp upstream
Tssr59020	transcription start site region 59020	1037 bp downstream
Tssr59021	transcription start site region 59021	219 bp downstream
Tssr63368	transcription start site region 63368	1718 bp upstream
Tssr63369	transcription start site region 63369	1688 bp upstream
Tssr63370	transcription start site region 63370	1638 bp upstream
Tssr63371	transcription start site region 63371	835 bp upstream
Tssr63372	transcription start site region 63372	812 bp upstream
Tssr63373	transcription start site region 63373	799 bp upstream
Tssr63374	transcription start site region 63374	201 bp downstream
Tssr63375	transcription start site region 63375	534 bp downstream
Tssr63376	transcription start site region 63376	570 bp downstream
Tssr63377	transcription start site region 63377	582 bp downstream
Tssr63378	transcription start site region 63378	1996 bp downstream