rs225171153 SNP Detail

Summary

• ID
  rs225171153
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114954295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGAGTACA CCCATCTTGC CAACTATTTT
  CCTTCTGGAA ATTTATTACC CAATTTTTAC GTTCCCATAG CTTGACACAG AACGTGAAAT
  GTCCTTTCCT TCCGTATTTG TTACTATTTT GGCAAATGTA TTTGGCACAA GAATCTCCTC
  S
  GTGAGACTTC CTACAGCAGG TGACCCAGCC ACGCCCCCCG CCACTCTCAA CTGAAAGGTA
  AGGTTTTTAC TAAGATTACA GTTGGAACAC AGTTACGGTT AACCCGGACT GAGCGCCCAG
  CGAGGGCCAC TTAAATCCAC GTACCCACGC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324534395	CHEV_13_115607967	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225171153					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114954295 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6123	CpG island 6123	within coordinates
Gm34790	predicted gene, 34790	within coordinates
Mocs2	molybdenum cofactor synthesis 2	412 bp upstream
Rr280966	regulatory region 280966	within coordinates
Rr404003	regulatory region 404003	320 bp upstream
Tssr121205	transcription start site region 121205	473 bp upstream