rs225172832 SNP Detail

Summary

• ID
  rs225172832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4252805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAGGCAA GCTGCATACA
  ACGCAGAGGT GTCCAGTTCT CTGTTAGACT GGGAGTTAGG GGATTACCAG CATCCTCTCC
  TCCTCACTTG CTCACGTCTT CGGTGGATTC TGGCTGCTTC ATTTCCCAAA CAGATGGCAA
  AGTGGCCCTC CTTCTGTCTC CACTGTCCTC CTTTCACTGT CCAGACACAG TCCTCAGTGA
  Y
  CCGCCCCCCC CCCCCCCCCC GGTGGGCTTA ACTCTCCTGG CAAAGTCCAG TCTCTTGATC
  AGGAACTTTG AGGATCCAGG TCCCACAGAG GTCTTCACTG TCTCCTACCC CACATGATCA
  CCTATCTCCA TAGCCCTGCC AGGCTCTTAG CGGCCACTCT GGCTGCTTCC AAGGCTGTAG
  CCTGCTTCTC CCATGCTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401632784	MGP_WTSI_19_4202806	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225172832					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401632784	MGP_WTSI_19_4202806	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4252805 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10391	CpG island 10391	832 bp distal
Gm30082	predicted gene, 30082	within coordinates
Gm59014	predicted gene, 59014	1393 bp upstream
Rad9a	RAD9 checkpoint clamp component A	1144 bp upstream
Rr405788	regulatory region 405788	942 bp downstream
Rr542669	regulatory region 542669	1043 bp distal
Rr542670	regulatory region 542670	293 bp distal
Rr542671	regulatory region 542671	598 bp proximal
Rr542672	regulatory region 542672	903 bp proximal
Rr542673	regulatory region 542673	1404 bp proximal
Tssr154297	transcription start site region 154297	990 bp downstream
Tssr154298	transcription start site region 154298	1388 bp upstream
Tssr154299	transcription start site region 154299	1405 bp upstream
Tssr157469	transcription start site region 157469	1381 bp upstream
Tssr157470	transcription start site region 157470	1217 bp upstream
Tssr157471	transcription start site region 157471	1183 bp upstream