rs225179933 SNP Detail

Summary

• ID
  rs225179933
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161112813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGTGTGA ACTGTCCACA
  CAACTATTAT TTGCTGTGTA TTTGAAATTC AAACTTAACC AGCCACCCTA TGCTTTCCCC
  AGAACTCCTA AGTGGGGTGT GCTTGTGCTA AGTTTAATTA CCTCGTAGGG CTGTTGTGGT
  GTTTAAGTAC CATCACGTTT ACTACCACTT GGAAAGTTTT TTAAGGAAAG TTTTTTTTTT
  K
  TTTGTTTGTT TTTTTTTTTT TTTTGTCCGA GACAGGGTTT GTCTGTATAG TCCTGGCTGT
  CCTGGAACTC ACTTTGTAGA CCAGGCTGGC CTCGAACTCA GAAATCTGCC TGCCTCTGCC
  TCCCAAGTGC TGGGATTAAA GGCGTTCACC ACCACTGCCC GGCTTAAGGA AAGTTTTTTA
  ACTTGTATAT AGGAAAACCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352144668	MGP_WTSI_1_163215373	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225179933					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352144668	MGP_WTSI_1_163215373	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161112813 () rs orientation: forward

Symbol	Name	Function Class
Rr421789	regulatory region 421789	1456 bp proximal
Rr421790	regulatory region 421790	1641 bp proximal