rs225185899 SNP Detail

Summary

• ID
  rs225185899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70354089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAGATCA GGAGTTCTAG
  ATCAGTCTCT GCTACGGAGT TTGAGGCCAG CCTAAAACAA AACAAAAGCC TCCAAACTCC
  AGGTTAGTGC TTCTCGCAGG CTTAGTTTCC AGGCCCGTGG AAGCCAGCTG GAAACTAGGG
  GACATGAACA TTCTGGCTTC CGGGATGCTG CACTAGAAAA CCAAGATTCC AACTCAGCCT
  Y
  CGCTCACACT GTGCACTCTG AAGCCCGCAG GCTGCCCTCT CTCGTCTAAC CGCATAACAA
  AAGCCTGGTC TGCGACGAAC AGGACGACAC TGAGACACTG ACCCGACAGT CCCCGGCGGG
  GCAGGTTCCG CTTGTAGTCG ATGGGGCCGT AGCCCCCTGG CGGGGGCATG TCCTGCTTCA
  CCTTCGACGC CGCCATACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375092115	MGP_WTSI_8_72425338	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225185899					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375092115	MGP_WTSI_8_72425338	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70354089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20428	CpG island 20428	within coordinates
Ndufa13	NADH:ubiquinone oxidoreductase subunit A13	within coordinates
Rr400887	regulatory region 400887	92 bp upstream
Rr400888	regulatory region 400888	1743 bp upstream
Rr664595	regulatory region 664595	255 bp proximal
Rr664596	regulatory region 664596	1109 bp proximal
Rr664597	regulatory region 664597	1249 bp proximal
Rr664598	regulatory region 664598	1368 bp proximal
Tssk6	testis-specific serine kinase 6	745 bp upstream
Tssr2594	transcription start site region 2594	329 bp upstream
Tssr77689	transcription start site region 77689	739 bp upstream
Tssr81543	transcription start site region 81543	304 bp upstream
Tssr81544	transcription start site region 81544	193 bp downstream
Tssr81545	transcription start site region 81545	222 bp downstream
Tssr81546	transcription start site region 81546	546 bp downstream
Tssr81547	transcription start site region 81547	576 bp downstream
Tssr81548	transcription start site region 81548	1719 bp downstream