rs225186652 SNP Detail

Summary

• ID
  rs225186652
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115436683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGCCCTCTC CTGGTGAAGC CGCGGAACTT
  CGGAGAGGAG ATCTGAGAAG ATTAATTTTG TTTGGTTCAG CAACTTTTTT TATTAAAGTT
  TACCCCCTTA AATATACTCA tcaagcttta acattagcca gagtctcttg gaggactcct
  W
  aaagctagaa gcctcggttc cacccacaga gtttccactg cgtcttgggt ggagcacaat
  aatttgcatt tctagcgagt tcccaggCAA GTTGGCAAAA GCACTACTCT CAGAACCACT
  TCCTTGTCCA CAAGTCACTG GGCAGGATGA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320892528	CHEV_3_115345952	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225186652					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115436683 () rs orientation: forward

Symbol	Name	Function Class
Gm40124	predicted gene, 40124	1438 bp upstream
Rr65099	regulatory region 65099	1883 bp distal
Rr65100	regulatory region 65100	1718 bp proximal
Rr367536	regulatory region 367536	596 bp downstream
Rr367537	regulatory region 367537	28 bp downstream
Rr397953	regulatory region 397953	1458 bp upstream
Tssr35264	transcription start site region 35264	1503 bp upstream
Tssr35265	transcription start site region 35265	1480 bp upstream