rs225208887 SNP Detail

Summary

• ID
  rs225208887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30304569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTGCTT GGGAATGGTG
  CAAGACAGGA GATGCCAGGG AAGGGCCACT AGTGGACAAC CAACGATTGC CACACACCTG
  CCCAGCTGTT TCCCTTCCAG ACCTCAGGGC CTTGGTGGCC ACCCCTCTTT TGGTGGTTTG
  TTTGTTTTTT CTAAATGAGT TCTGGATCAT CCAGGTTGGG ATCAATAGTG GGGGAAATAC
  R
  CTTTTGTGCT TCTGCTGTGA GTAATAAGCC AAAAGACCCC ATTTGGGCTC AGTTTATTAG
  CACAACCATG GGATTTGATT GTCTCCTTGT TTCAGTCTCC CTAGCATTAA AATGCTTATG
  CAGTAAGGTG GTCCCAGAGG GTGACGGAAG GCGGGACGAC TTGGAGGAGG GTCTCAGGTG
  CTGCCAGGAC TCTTAGTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353515390	MGP_WTSI_2_30270077	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225208887					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353515390	MGP_WTSI_2_30270077	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30304569 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11436	CpG island 11436	534 bp proximal
Crat	carnitine acetyltransferase	within coordinates
Gm16323	predicted gene 16323	within coordinates
Ptpa	protein phosphatase 2 protein activator	1493 bp upstream
Tssr17115	transcription start site region 17115	1061 bp upstream
Tssr17116	transcription start site region 17116	1474 bp upstream
Tssr17117	transcription start site region 17117	1523 bp upstream
Tssr17118	transcription start site region 17118	1539 bp upstream
Tssr17119	transcription start site region 17119	1630 bp upstream
Tssr23368	transcription start site region 23368	1258 bp upstream
Tssr23369	transcription start site region 23369	439 bp upstream
Tssr23370	transcription start site region 23370	377 bp upstream
Tssr23371	transcription start site region 23371	745 bp downstream
Tssr23372	transcription start site region 23372	832 bp downstream
Tssr23373	transcription start site region 23373	861 bp downstream
Tssr23374	transcription start site region 23374	881 bp downstream
Tssr23375	transcription start site region 23375	903 bp downstream
Tssr23376	transcription start site region 23376	952 bp downstream
Tssr23377	transcription start site region 23377	1015 bp downstream
Tssr23378	transcription start site region 23378	1057 bp downstream
Tssr23379	transcription start site region 23379	1077 bp downstream
Tssr23380	transcription start site region 23380	1210 bp downstream
Tssr23381	transcription start site region 23381	1446 bp downstream