rs225209533 SNP Detail

Summary

• ID
  rs225209533
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115053726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTACCCTGT TACAGTGTTA CTGTGTTACA GAAGACATCC
  GTCCGGTTCT TAAGTTGGCT CTGGGGAGGG GGAGGAGTGA GTGTGGGGGA GCATGGGGTG
  R
  TTTCCCCAGC AACTGTCGCT CCCCTCTCTC GGGCCAAGCT ATGCAACAGG CTTTGGCTCA
  AGGCGGTTAA AGCGTTGAGA ATCCTTTACC CAGAGACTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384822764	MGP_WTSI_11_115024214	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225209533					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384822764	MGP_WTSI_11_115024214	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115053726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	20 bp proximal
Cpgi4110	CpG island 4110	1834 bp proximal
Gm72084	predicted gene, 72084	within coordinates
Nherf1	NHERF family PDZ scaffold protein 1	441 bp upstream
Rab37	RAB37, member RAS oncogene family	664 bp downstream
Rr369433	regulatory region 369433	within coordinates
Rr403111	regulatory region 403111	162 bp upstream
Rr459781	regulatory region 459781	1820 bp distal
Rr459782	regulatory region 459782	1422 bp distal
Rr459783	regulatory region 459783	within coordinates
Rr459784	regulatory region 459784	1412 bp proximal
Rr459785	regulatory region 459785	1669 bp proximal
Tssr3727	transcription start site region 3727	456 bp upstream
Tssr105840	transcription start site region 105840	433 bp upstream
Tssr105841	transcription start site region 105841	474 bp upstream
Tssr105842	transcription start site region 105842	500 bp upstream
Tssr105843	transcription start site region 105843	517 bp upstream
Tssr105844	transcription start site region 105844	538 bp upstream
Tssr111730	transcription start site region 111730	229 bp downstream