rs225216944 SNP Detail

Summary

• ID
  rs225216944
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23924666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAAACCA GAAATTTGTT
  CAGTGGATCC AGTGTTGATT TCAGTGACCT AAGTGTTTAA CGTGGGAAAG CCAGATCAGA
  AAGTAAAAAT CCGTTTTCTC CCAGTGTTTT GAGCCCTCAC TTTAAATGAG CGAACAGCTG
  TTTTAGTACA GAGCATGATA AATAGACCCA TCTTCCCAAT TCCATGCCCT CGGGACCGAC
  W
  CTCTCGATTC TTCCCAGCTT TTATTTCATG TTTGTCATAG GTTAAATTCC TCGAATAACC
  TGAATCTCAA CTTTCTGCGT CTTTTTTTGT AGTTTCTAAG GTAGAATTAG ACAAACTCTT
  CTCGGTGCTA TCGTCAATGT GGAGGATACT TGGTACGTAG CAATGATTCA AATATTGTTT
  GGTAAACTTA TAATAGGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NZO/HlLtJ	SEA/GnJ	SPRET/EiJ	WSB/EiJ
ss387989028	MGP_WTSI_13_23832552	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NZO/HlLtJ	SEA/GnJ	SPRET/EiJ	WSB/EiJ
rs225216944					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387989028	MGP_WTSI_13_23832552	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23924666 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	621 bp distal
Gm60901	predicted gene, 60901	1618 bp upstream
H1f2	H1.2 linker histone, cluster member	1152 bp downstream
Rr369656	regulatory region 369656	145 bp downstream
Rr388130	regulatory region 388130	973 bp upstream
Rr475930	regulatory region 475930	1865 bp distal
Rr475931	regulatory region 475931	1497 bp distal
Rr475932	regulatory region 475932	1128 bp proximal
Rr475933	regulatory region 475933	1629 bp proximal
Tssr118854	transcription start site region 118854	1874 bp downstream
Tssr118855	transcription start site region 118855	1485 bp downstream
Tssr118856	transcription start site region 118856	748 bp downstream
Tssr118857	transcription start site region 118857	508 bp downstream
Tssr118858	transcription start site region 118858	1618 bp upstream