rs225218027 SNP Detail

Summary

• ID
  rs225218027
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98307870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCGCAAGT GCATGGTGAG
  GCCCCTCGAC TCCTTAGCGT CACCTGCCCT CGGGTTCTGT CCTAGAGCTG GGTTAGCGTC
  TGGAGGGAGC AAAGATCTGG GAAATGCTGT GAATCTTCTC TCCCAGCCCC AGAGCCCCAG
  GGTATGCTAA ACACACCCTG CAAGTGTGGG GTGGCTGGAC AAAACCGATT GTTTGGTCAG
  M
  TGGGAAGGCT CTAACTCTGC CAGGTGCTCA GACACACATG GCCTCACCAA AGCTCACCCT
  AACTGAGGAG ATAGGAGCTC ATTCATTTTA CAGATAAAAT CAACTTAATG GATTCCGTAG
  AGTAGTGGGG AGGGGCATGG AATTCTTGAA CTCTTTGGTG GAGAGCAGAA AGAGAGGAGA
  AGGCACAGGG AGTCCTCGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323129386	CHEV_9_98326236	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225218027					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98307870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	124 bp distal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685258	regulatory region 685258	1563 bp proximal
Tssr2984	transcription start site region 2984	713 bp downstream
Tssr86646	transcription start site region 86646	985 bp downstream
Tssr86647	transcription start site region 86647	912 bp downstream
Tssr86648	transcription start site region 86648	882 bp downstream
Tssr86649	transcription start site region 86649	847 bp downstream
Tssr86650	transcription start site region 86650	487 bp downstream
Tssr86651	transcription start site region 86651	304 bp downstream