rs225218142 SNP Detail

Summary

• ID
  rs225218142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:143910533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACCCTT TTGTAAGCAA
  GGAACCGCTA CAAAGCTGGC GGCCCGGGGC TGCCCTCCTT GCTAGCTCGC AGGCCGGCCT
  CCGGTAGTTT CAGACTCACG CATTATCTAA GGCGACGTAT TGTTTACTTG CAATTTGGGA
  CGGTCAAGGG AAGGAAGCCA AAGAAAACAG CCCCGGCCCC GATCAGTTCC CCCCTCCCTC
  Y
  CTCCCTCGTC CCCTCCGGGC CCGCGGCGTC CCCAGCCACC CCCTTACCTG CTTCTCCCCT
  ATATTGCAAC ACTGCGAGAG GCGGCGGCGG CGGCGAAATG CGAGCGGAGC CGCTCGGCTT
  CCAGGGCAGG GGCGCTGGGG CTGGCGGAGC TGGAGGGAGG GAGGGAGTTC TCGCAGAAGC
  AGGAAAGGGG AGGAGGGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360062417	MGP_WTSI_3_143867736	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225218142					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360062417	MGP_WTSI_3_143867736	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143910533 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13895	CpG island 13895	within coordinates
Lmo4	LIM domain only 4	Intron
Rr398096	regulatory region 398096	707 bp upstream
Rr406521	regulatory region 406521	230 bp distal
Rr586600	regulatory region 586600	1886 bp distal
Rr586601	regulatory region 586601	within coordinates
Rr586602	regulatory region 586602	438 bp proximal
Tssr35968	transcription start site region 35968	86 bp downstream
Tssr35969	transcription start site region 35969	114 bp downstream
Tssr35970	transcription start site region 35970	184 bp downstream
Tssr35971	transcription start site region 35971	393 bp downstream
Tssr35972	transcription start site region 35972	735 bp downstream
Tssr35973	transcription start site region 35973	1171 bp downstream