rs225220838 SNP Detail

Summary

• ID
  rs225220838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87052337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCCAAGTA CTTGCCCAGG TCAAGCTTAA
  TGGGGGGCCA AGTAGACAGC AGGACATTCA GTGTGCCTTG TTTCCTTTGT CTTTTGGCTC
  CAGGTATCAG CAAGCCAAAC AAAGGCCCCT CATCTAAGCT GTGTTCTTCC AGGCCTACCT
  Y
  CAGCGCCCAG AATGAGCCTA TTGGCCCCCA CAGCTCTCAG GAGCAAGAGT GATGTACAGG
  ACATTGTGAG CAAGAAGTGG GTGCTGCAAA CTGCATAACC CCCCTCCCTA CCCGGGGAGG
  ACACCGAGTG CTCACACAGA GCTTACTCGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319829033	CHEV_1_89021190	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225220838					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87052337 () rs orientation: forward

Symbol	Name	Function Class
Akp3	alkaline phosphatase 3, intestine, not Mn requiring	358 bp upstream
Tssr145	transcription start site region 145	1729 bp upstream
Tssr7781	transcription start site region 7781	331 bp upstream
Tssr7782	transcription start site region 7782	781 bp upstream
Tssr7783	transcription start site region 7783	1073 bp upstream
Tssr7784	transcription start site region 7784	1316 bp upstream
Tssr7785	transcription start site region 7785	1352 bp upstream
Tssr7786	transcription start site region 7786	1382 bp upstream
Tssr7787	transcription start site region 7787	1708 bp upstream
Tssr12838	transcription start site region 12838	1103 bp downstream
Tssr12839	transcription start site region 12839	1118 bp downstream
Tssr12840	transcription start site region 12840	1131 bp downstream