rs225222164 SNP Detail

Summary

• ID
  rs225222164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101205879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGGAAA TGTATTAGCT
  TATAAAGAAT TGGGTTTTTA TTATGGTTTT GTCAAAATAT TTTAATTTTT TCCTCTACCA
  ACAGTTCCCC CACTCTCTTT CTTTTGTGTT TTCCCATCCC ATTCCCAGTA TCCTTTCTAT
  TTCACACCAC ATGTGACCTT TACCCAGCCC CACCCTTTCT CAACACTTCT TGTTTCCCTC
  Y
  TGCAGTCTCC TGTCTAGTTT CACACTCTCT AACCCACTTT CCCAAACTCT TACTAACACA
  GGGTCTGCAG ACAAGGGGGA ACAGGTGATT GTTTTTCTTT CTGAGACTTG GTCACCTCAC
  TTACTATACA ATCCTTTACA GTTCCATCAG TTTTCCTGCA AATTTCATTT TTTCCTTTAC
  CTTAGTAGTT TAAAACTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323149606	CHEV_9_101231010	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225222164					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101205879 () rs orientation: forward

Symbol	Name	Function Class
Rr198413	regulatory region 198413	within coordinates
Rr206996	regulatory region 206996	1280 bp distal