rs225234565 SNP Detail

Summary

• ID
  rs225234565
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117255980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCCCCCA GAGAGACTTC
  TAAAAATGAG AACATTCGTT CTGGGTCGCA TTTCTTTTGA CATTTCCTAT TTGCTACCTT
  GTTTTAATTA AATCTTGGCT CTCTTTGTAA GAAAGAGTTC CTCTCTGCAG AAATGCAAGA
  ATGTCCAGAA TGCAAAGCTG GGACGGCTTT TCCAGCAGCT CGGGATCTGA AGCCCCTTCT
  S
  GACAAGAGTC CTTCTTCAAG CCCAGCCTCA GCAGAGGTTC TCGGAGCTGT CTCTTCTCCA
  GAGGATGAGG TCAGCTTCCT GCGTGTGCTT GTTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTA AACTGTTGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366399288	MGP_WTSI_5_117567924	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225234565					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366399288	MGP_WTSI_5_117567924	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117255980 () rs orientation: forward

Symbol	Name	Function Class
9530046B11Rik	RIKEN cDNA 9530046B11 gene	within coordinates
Gm57263	predicted gene, 57263	692 bp downstream
Rr399292	regulatory region 399292	1926 bp upstream
Rr618567	regulatory region 618567	1902 bp distal
Rr618568	regulatory region 618568	1312 bp distal
Rr618569	regulatory region 618569	1656 bp distal
Rr618570	regulatory region 618570	within coordinates
Rr618571	regulatory region 618571	854 bp proximal
Rr618572	regulatory region 618572	1513 bp proximal
Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	mRNA-UTR
Tssr52877	transcription start site region 52877	1957 bp upstream
Tssr52878	transcription start site region 52878	1905 bp upstream
Tssr52879	transcription start site region 52879	1818 bp upstream
Tssr52880	transcription start site region 52880	1961 bp downstream