rs225236260 SNP Detail

Summary

• ID
  rs225236260
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19061218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACATTTGT GAATGTATTA
  AAGAATCTCA TCATTAGAAA GGCTAGGAAC TACTGATGTA GAGTTTAATT TATGAAAACT
  TAATTATTAA TGAATTTTTC TCACACAAAC TGAAGTCAGA GAATATACCT TCATGAATTT
  CCCCTTCTTA TAACTTTCAA GGATCCTAGA CTCTCTCTAT ATGGTTCCTA ATCATATTCA
  T
  ATATGGGGAC ACACCTGTGA ATATTGGTAT CTAGAAGGAT ACATATTATA CTGCATGACT
  CCCTTGATGC GCTAGAAATA AAAGATTTTA GAAAACTACA TGGCAAATCC AAACAGAAAT
  TTTAAATAAT GTAGTATTTT GGTTGAAAAA AATATAGCAG TGTTTCCATA CTTGTCTTTA
  AATAAAGATT AAAGAAGACT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss395552151	MGP_WTSI_16_19242561	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs225236260					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395552151	MGP_WTSI_16_19242561	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19061218 () rs orientation: forward

Symbol	Name	Function Class
A530030E21Rik	RIKEN cDNA A530030E21 gene	1057 bp upstream
Gm35545	predicted gene, 35545	1134 bp downstream
Gm56600	predicted gene, 56600	within coordinates
Iglv3	immunoglobulin lambda variable 3	789 bp upstream
Rr512770	regulatory region 512770	426 bp distal
Tssr137404	transcription start site region 137404	1209 bp downstream
Tssr137405	transcription start site region 137405	1184 bp downstream
Tssr140323	transcription start site region 140323	1360 bp upstream
Tssr140324	transcription start site region 140324	758 bp upstream
Tssr140325	transcription start site region 140325	732 bp upstream
Tssr140326	transcription start site region 140326	654 bp upstream