rs225243335 SNP Detail

Summary

• ID
  rs225243335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59737769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAGTACAG AAGTTAAATG TATGCTTACT
  CATATACATA CACATATTTA TATACATCTG TCCTAAAAGT GTGTAAGTAT TAATGTCAGG
  GAGATGCTGC TGTTGCCCTC AAGAAAAAAC TTGCTCAGCA TCAATAAAGC TGATAAGTGG
  Y
  AAAAATACAA TTATTAGACC CAGTGTATTC Tttttggttt ttccaggcag gatttgtctg
  tatagctctg gctgtcctgg aactcggtct atagaccagg ctggtcttga attcaaagat
  ccaactgcct ctgcttccga ggtgctggga                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319739029	CHEV_1_59755454	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225243335					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59737769 () rs orientation: forward

Symbol	Name	Function Class
Nop58	NOP58 ribonucleoprotein	within coordinates
Rr371359	regulatory region 371359	within coordinates
Rr411703	regulatory region 411703	496 bp distal
Tssr6887	transcription start site region 6887	535 bp downstream
Tssr11836	transcription start site region 11836	831 bp upstream