rs225249591 SNP Detail

Summary

• ID
  rs225249591
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:110013785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCCTTC TCAGTATCTT
  CTGCCACTGG CTTCCAAAAA TGCTGCAAAG GCAGAAAAGA ACAAAAGCTA TTTGCTGGGA
  GATGCAGACT CCAAAGTGGT ATATAAGCAT ACGTAGGCTT GTGAGTATAT GTGTGTGTAT
  ACAAATATAA ATGTGTGTAT ACATATACAT ATATTCATAT ACACATATAT TGTGTATATA
  Y
  ATTGTCTACA TATTATCTCT ATATGTCTAT ATATGTTTAT ATGTATTTTA CTAGTTCTAT
  CTCTACATAT ATGACATATG TCTGTATATA GATGTCTCTC TGTCTATATG TAATTATCTA
  GTTCTCTATC TTATATATAT GTATATATAT TCTTTCTCTA TAAATAGATA ATTTATGTAT
  ATAGAGAGAG CTAGCTAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	KK/HlJ	LEWES/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359204692	MGP_WTSI_3_109909387	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	T	T	T	T	C	T	T	C	T	C	T	T	C	T	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	KK/HlJ	LEWES/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs225249591					SNP	T	C	T	T	T	T	C	T	T	C	T	C	T	T	C	T	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359204692	MGP_WTSI_3_109909387	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110013785 () rs orientation: forward

Symbol	Name	Function Class
Ntng1	netrin G1	within coordinates