rs225249620 SNP Detail

Summary

• ID
  rs225249620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87843236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTTGAAG TCTGATGCAG
  AAGAATTACT ATAACTTTGA GAACACCCTG AAATAAAAGG TAAATTCTAG GCAATCCTGG
  GGTACAGATT AAGGCCCTTT TTTTTTAAAG ATACACAAAG CAAGAAAGCA TTGTCTAGGG
  TAACATGAAG AAAATAAGTG TTCTTAAGGA GTGTCTCCTA ACCTATTCTA CTTATGGATG
  R
  ATTACAGAGT AAAATAAAAC TGATGTTCAA GAGTTTTCAA AATCGTTTCA CCTTATCCCA
  AGCCAATTTA CTGGGGGAGT TACACTATTA CATTCGAGTA TACTCCATTG TGTGTATGGC
  TAGCAGTGTG GTATGCTAGT GGAATGATGC TATTCTGATG ACTATTAATT TGAAGGCATG
  CTCTGCTACA TTGCATCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777303	MGP_WTSI_5_88124402	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225249620					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777303	MGP_WTSI_5_88124402	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87843236 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	1399 bp distal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	1359 bp distal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	1202 bp distal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	1514 bp distal
Tssr1529	transcription start site region 1529	816 bp downstream
Tssr46883	transcription start site region 46883	866 bp downstream
Tssr46884	transcription start site region 46884	851 bp downstream
Tssr46885	transcription start site region 46885	830 bp downstream
Tssr46886	transcription start site region 46886	800 bp downstream
Tssr46887	transcription start site region 46887	783 bp downstream
Tssr46888	transcription start site region 46888	677 bp downstream
Tssr46889	transcription start site region 46889	658 bp downstream
Tssr46890	transcription start site region 46890	625 bp downstream
Tssr46891	transcription start site region 46891	612 bp downstream
Tssr46892	transcription start site region 46892	583 bp downstream
Tssr46893	transcription start site region 46893	557 bp downstream
Tssr46894	transcription start site region 46894	512 bp downstream
Tssr46895	transcription start site region 46895	492 bp downstream
Tssr46896	transcription start site region 46896	413 bp downstream
Tssr51618	transcription start site region 51618	837 bp upstream
Tssr51619	transcription start site region 51619	803 bp upstream
Tssr51620	transcription start site region 51620	793 bp upstream
Tssr51621	transcription start site region 51621	774 bp upstream
Tssr51622	transcription start site region 51622	738 bp upstream
Tssr51623	transcription start site region 51623	722 bp upstream
Tssr51624	transcription start site region 51624	705 bp upstream
Tssr51625	transcription start site region 51625	695 bp upstream
Tssr51626	transcription start site region 51626	683 bp upstream
Tssr51627	transcription start site region 51627	657 bp upstream
Tssr51628	transcription start site region 51628	547 bp upstream
Tssr51629	transcription start site region 51629	453 bp upstream
Tssr51630	transcription start site region 51630	405 bp upstream
Tssr51631	transcription start site region 51631	366 bp upstream
Tssr51632	transcription start site region 51632	107 bp upstream
Tssr51633	transcription start site region 51633	676 bp downstream
Tssr51634	transcription start site region 51634	798 bp downstream
Tssr51635	transcription start site region 51635	1762 bp downstream
Tssr51636	transcription start site region 51636	1788 bp downstream
Tssr51637	transcription start site region 51637	1901 bp downstream