rs225254996 SNP Detail

Summary

• ID
  rs225254996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76301796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCACTCTTG CTAGGAGGGT AACAGAGAGG
  CAGTTATCCC AGGTGTTCCC CACCACACTC TGAAAGCTAG GGCCTATGAC AACGTGGAAA
  GCCGCATTGC CTGCTCCAGG TCAGTAGCCG GAATCAGCTT AAGGCCTCCA AGATCCTGCC
  Y
  GGAGAAGCCA GTACGATCCA AAATCACACT GCTTTGCAGG ACTCTGTCGC CGCAACCTAG
  GTCACGCAAA CTTGCTCAGA CAGGCCCATT CCTGCCCGGA CTCCGCCCAG TTCCACCGCG
  CCCCCTACAC ACTATCTCTG ATTGGCTAAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104761	CHEV_12_77356009	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225254996					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76301796 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	within coordinates
Gm47525	predicted gene, 47525	within coordinates
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	276 bp upstream
Rr403350	regulatory region 403350	23 bp upstream
Tssr113934	transcription start site region 113934	187 bp upstream
Tssr113935	transcription start site region 113935	222 bp upstream
Tssr113936	transcription start site region 113936	268 bp upstream
Tssr113937	transcription start site region 113937	310 bp upstream
Tssr113938	transcription start site region 113938	326 bp upstream
Tssr113939	transcription start site region 113939	349 bp upstream
Tssr113940	transcription start site region 113940	431 bp upstream
Tssr113941	transcription start site region 113941	461 bp upstream
Tssr116711	transcription start site region 116711	24 bp downstream
Tssr116712	transcription start site region 116712	50 bp downstream