rs225275494 SNP Detail

Summary

• ID
  rs225275494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44396261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTATTTCC TCAGCCCCCT
  TTTATCGGCT GCCAGCAAAG GGTAAAGAGC GCAGAGATAG CTAGCCAAGG AAGCCAGGCG
  TGGAGGTGAG GGAGGGAGGG AGGGAGGGAG GGAGGAAGGG AGGGAGGGAG GGAGGGAGGG
  AGAGAGAGAG GGCGGGACCA AGAACGGGAA AGAAAGCCAA GTAGATTCCA GAGTAGACCT
  Y
  GGAGGCGCCG GGATGCTGAA GGCATCAACA GGGCGCGCTG CTCCAACCCC CTGCCTGGGG
  ATAAATGCTA ATGTGCCTCC TGTGAAGCCC GTCTTGTCAT TGGCCAAAGA GAATTTGGTG
  CCACCTTGTC CTGCCTTTTC CATTGGCTAG GCGCAATCTG CTGTTCCCTC TGCCTCTAGC
  TTCTCGCTCT CTCCTCCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402552361	MGP_WTSI_19_44482312	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225275494					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402552361	MGP_WTSI_19_44482312	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44396261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10894	CpG island 10894	171 bp distal
D19Mit1000	DNA segment, Chr 19, Massachusetts Institute of Technology 1000	within coordinates
Gm59215	predicted gene, 59215	673 bp downstream
Rr363360	regulatory region 363360	within coordinates
Scd1	stearoyl-Coenzyme A desaturase 1	113 bp upstream
Tssr5525	transcription start site region 5525	347 bp upstream
Tssr5526	transcription start site region 5526	314 bp upstream
Tssr5527	transcription start site region 5527	304 bp upstream
Tssr5528	transcription start site region 5528	274 bp upstream
Tssr5529	transcription start site region 5529	223 bp upstream
Tssr156612	transcription start site region 156612	1190 bp downstream
Tssr156613	transcription start site region 156613	1091 bp downstream
Tssr156614	transcription start site region 156614	198 bp upstream
Tssr159513	transcription start site region 159513	1240 bp upstream
Tssr159514	transcription start site region 159514	1192 bp upstream
Tssr159515	transcription start site region 159515	1170 bp upstream
Tssr159516	transcription start site region 159516	1054 bp upstream
Tssr159517	transcription start site region 159517	324 bp upstream
Tssr159518	transcription start site region 159518	253 bp upstream
Tssr159519	transcription start site region 159519	199 bp upstream
Tssr159520	transcription start site region 159520	154 bp upstream
Tssr159521	transcription start site region 159521	110 bp upstream
Tssr159522	transcription start site region 159522	within coordinates
Tssr159523	transcription start site region 159523	9 bp downstream
Tssr159524	transcription start site region 159524	61 bp downstream
Tssr159525	transcription start site region 159525	912 bp downstream
Tssr159526	transcription start site region 159526	942 bp downstream