rs225277833 SNP Detail

Summary

• ID
  rs225277833
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70703570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCCCTTC CTTGTTACTT
  CATACCATCC TCTGTGCTTC CTTCCTCAGG GGCTGATGCT GCACCAACTG TATCCATCTT
  CCCACCATCC AGTGAGCAGT TAACATCTGG AGGTGCCTCA GTCGTGTGCT TCTTGAACAA
  CTTCTACCCC AAAGACATCA ATGTCAAGTG GAAGATTGAT GGCAGTGAAC GACAAAATGG
  Y
  GTCCTGAACA GTTGGACTGA TCAGGACAGC AAAGACAGCA CCTACAGCAT GAGCAGCACC
  CTCACGTTGA CCAAGGACGA GTATGAACGA CATAACAGCT ATACCTGTGA GGCCACTCAC
  AAGACATCAA CTTCACCCAT TGTCAAGAGC TTCAACAGGA ATGAGTGTTA GAGACAAAGG
  TCCTGAGACG CCACCACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815804	CHEV_6_70676580	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225277833					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70703570 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	within coordinates
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	within coordinates
Rr158	regulatory region 158	635 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	1151 bp downstream
Rr399685	regulatory region 399685	739 bp downstream
Rr399686	regulatory region 399686	within coordinates
Tssr1880	transcription start site region 1880	264 bp upstream
Tssr56956	transcription start site region 56956	753 bp downstream
Tssr56957	transcription start site region 56957	114 bp downstream
Tssr56958	transcription start site region 56958	98 bp downstream
Tssr56959	transcription start site region 56959	80 bp downstream
Tssr56960	transcription start site region 56960	65 bp downstream
Tssr56961	transcription start site region 56961	49 bp downstream
Tssr56962	transcription start site region 56962	37 bp downstream
Tssr56963	transcription start site region 56963	3 bp upstream
Tssr56964	transcription start site region 56964	18 bp upstream
Tssr56965	transcription start site region 56965	24 bp upstream
Tssr56966	transcription start site region 56966	35 bp upstream
Tssr56967	transcription start site region 56967	50 bp upstream
Tssr56968	transcription start site region 56968	74 bp upstream
Tssr56969	transcription start site region 56969	110 bp upstream
Tssr56970	transcription start site region 56970	123 bp upstream
Tssr56971	transcription start site region 56971	143 bp upstream
Tssr56972	transcription start site region 56972	169 bp upstream
Tssr56973	transcription start site region 56973	207 bp upstream
Tssr56974	transcription start site region 56974	239 bp upstream
Tssr56975	transcription start site region 56975	272 bp upstream
Tssr61321	transcription start site region 61321	77 bp upstream
Tssr61322	transcription start site region 61322	61 bp downstream
Tssr61323	transcription start site region 61323	76 bp downstream
Tssr61324	transcription start site region 61324	166 bp downstream
Tssr61325	transcription start site region 61325	232 bp downstream
Tssr61326	transcription start site region 61326	267 bp downstream
Tssr61327	transcription start site region 61327	281 bp downstream
Tssr61328	transcription start site region 61328	372 bp downstream