rs225281730 SNP Detail

Summary

• ID
  rs225281730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141010848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCAGCGA AGCTTAGTGG
  CCAAGGCTCA AAATGGAGAA CATTTTAGAA CTTTAAACAG TTTTTAAACC CCACTGGCCG
  TACTTTAAAC AGTTTTCAGC ACCCCCTGTA CTTTAAAATT TTTCAGCCCT CGTGCAGTTG
  GCGGTTGGTG TTACTTTCCA TAAGTTCTGC CCCCTTTTCC TATTGGCTAC GGACATAGAT
  Y
  CCCCCCCCCC CCGTTTCTCG TTGGCCTTCA AATTTTGGCC CCGCCTCCTC GTGTGAAGAG
  GTTCCCACCC AAAATTGAAT ATTTAATATT AACTTGTGCC AGGACAGGTA GCTGGGAACT
  TGAGATGTAT TTGTTTTCCA TATTAAGCTT ACAAAAGCAA GGTCCTCCCC TTCTGTTTTG
  TTGGGGTTTT GGGGGGATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404771989	MGP_WTSI_X_138662395	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs225281730					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404771989	MGP_WTSI_X_138662395	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141010848 () rs orientation: forward

Symbol	Name	Function Class
Nxt2	nuclear transport factor 2-like export factor 2	within coordinates
Rr8327	regulatory region 8327	within coordinates
Rr406176	regulatory region 406176	within coordinates
Tssr162232	transcription start site region 162232	1046 bp downstream
Tssr162233	transcription start site region 162233	71 bp upstream
Tssr162234	transcription start site region 162234	330 bp upstream
Tssr162235	transcription start site region 162235	432 bp upstream
Tssr162236	transcription start site region 162236	847 bp upstream