rs225287670 SNP Detail

Summary

• ID
  rs225287670
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54799555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTCGTCA AGAACTGAAT
  GCACTACAAG AAGAACTTGG GCCATTTGGC TTGGTCATTC TGGGCTTCCC TTCCAACCAA
  TTTGGCAAAC AGGAGCCAGG CGAGAACTCG GAGATACTCC CCAGTCTCAA GTGAGTTCTC
  ATGGCTGGAG ACGGCAGCCT CTATGGGGCA GAGGCTCAGG GGCTGCAGAT ATTGGTTGAC
  R
  GTCTCCACGT CAGCCACTCA GTTACTCCCG CTCCCCCATC CTCACCCCAG TTTGGGGTTT
  AATGGAATGA GGGGGAGGGT ACAGGAAATA GGAGGCTGTG GGTAACTGTC TGGGCAGCAC
  ATTGAAGGGT AGAGATGTGG GGTGGGTATA GAGAGGGGCT GAGATGGCAG ATACACACTG
  GGCCTATGTA TGTCCATGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428898	MGP_WTSI_11_54722231	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225287670					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428898	MGP_WTSI_11_54722231	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54799555 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tssr3502	transcription start site region 3502	912 bp downstream
Tssr3503	transcription start site region 3503	1386 bp upstream
Tssr101553	transcription start site region 101553	1948 bp downstream
Tssr101554	transcription start site region 101554	1936 bp downstream
Tssr101555	transcription start site region 101555	1894 bp downstream
Tssr101556	transcription start site region 101556	1599 bp downstream
Tssr101557	transcription start site region 101557	1569 bp downstream
Tssr101558	transcription start site region 101558	1552 bp downstream
Tssr101559	transcription start site region 101559	1529 bp downstream
Tssr101560	transcription start site region 101560	1483 bp downstream
Tssr101561	transcription start site region 101561	172 bp downstream
Tssr101562	transcription start site region 101562	125 bp downstream
Tssr101563	transcription start site region 101563	113 bp downstream
Tssr101564	transcription start site region 101564	92 bp downstream
Tssr101565	transcription start site region 101565	323 bp upstream
Tssr101566	transcription start site region 101566	373 bp upstream
Tssr101567	transcription start site region 101567	734 bp upstream
Tssr101568	transcription start site region 101568	810 bp upstream
Tssr101569	transcription start site region 101569	893 bp upstream
Tssr101570	transcription start site region 101570	915 bp upstream
Tssr101571	transcription start site region 101571	969 bp upstream
Tssr101572	transcription start site region 101572	1064 bp upstream
Tssr101573	transcription start site region 101573	1101 bp upstream
Tssr101574	transcription start site region 101574	1115 bp upstream
Tssr101575	transcription start site region 101575	1163 bp upstream
Tssr101576	transcription start site region 101576	1177 bp upstream
Tssr101577	transcription start site region 101577	1206 bp upstream
Tssr101578	transcription start site region 101578	1289 bp upstream
Tssr108006	transcription start site region 108006	1444 bp upstream
Tssr108007	transcription start site region 108007	155 bp upstream
Tssr108008	transcription start site region 108008	94 bp upstream
Tssr108009	transcription start site region 108009	78 bp upstream
Tssr108010	transcription start site region 108010	332 bp downstream
Tssr108011	transcription start site region 108011	928 bp downstream
Tssr108012	transcription start site region 108012	962 bp downstream
Tssr108013	transcription start site region 108013	1056 bp downstream
Tssr108014	transcription start site region 108014	1063 bp downstream
Tssr108015	transcription start site region 108015	1146 bp downstream
Tssr108016	transcription start site region 108016	1198 bp downstream
Tssr108017	transcription start site region 108017	1249 bp downstream
Tssr108018	transcription start site region 108018	1264 bp downstream
Tssr108019	transcription start site region 108019	1300 bp downstream
Tssr108020	transcription start site region 108020	1356 bp downstream
Tssr108021	transcription start site region 108021	1376 bp downstream
Tssr108022	transcription start site region 108022	1387 bp downstream
Tssr108023	transcription start site region 108023	1640 bp downstream