rs225287678 SNP Detail

Summary

• ID
  rs225287678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115285861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TGTCTGTGTT TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  Y
  GCGCTGTTTG ATTTGTTTTC TCTTTTCCTA AACACTGTGA AGATTACAGA           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321654347	CHEV_5_115597811	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225287678					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115285861 () rs orientation: forward

Symbol	Name	Function Class
Mlec	malectin	within coordinates
Rr618145	regulatory region 618145	1889 bp distal
Rr618146	regulatory region 618146	84 bp distal
Rr618147	regulatory region 618147	1388 bp proximal
Tssr48205	transcription start site region 48205	79 bp downstream
Tssr52756	transcription start site region 52756	39 bp downstream
Tssr52757	transcription start site region 52757	204 bp downstream
Tssr52758	transcription start site region 52758	253 bp downstream