rs225287932 SNP Detail

Summary

• ID
  rs225287932
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15148050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTAAAAA AGGAGCGGCT
  AGAACTGTCC CCACTGAGCA AGCCAGACAC TACCTGGGGG AACAGAGTGA ATTTTACATG
  TGAACAGCAG CTAGAAGAGC CAGAACCCAG AAGGCAAGCA ACCCAGGAAC AGGAAAGCCA
  GGAAACAAAA CAAGGCAGCC GGGTGAGAAA CAAACATTAG GGACAAAGCG AAGCGGAATC
  K
  AGGAGCAAAT TAAATCTAAA ACTGAGAGAG AAAGAGGGGG GGGGGGAGAG AGATTACAGC
  ATAAGGAGAC AAAATAGCAC GGAAAGAATG GTCAGGCTAG AGATGCGAAG CAAGGAAGTC
  AATTCCCAAG CAAGGAATGG GACCATAGGG AAAACCATCA AAAGCTAGAA GAGAAGGTTA
  ATGATAGTAA TTACAACTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321047401	CHEV_4_15075197	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225287932					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15148050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	726 bp proximal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr100616	regulatory region 100616	within coordinates
Tssr40968	transcription start site region 40968	891 bp downstream
Tssr40969	transcription start site region 40969	911 bp downstream
Tssr40970	transcription start site region 40970	927 bp downstream
Tssr40971	transcription start site region 40971	961 bp downstream
Tssr40972	transcription start site region 40972	1001 bp downstream
Tssr40973	transcription start site region 40973	1705 bp downstream