rs225288949 SNP Detail

Summary

• ID
  rs225288949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5846739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGACCT TGTAACAGGA
  TTCTGGAAAA GCTGGGGAAA CTGGTTGCCC GCTTTCCCCC TTTTCCCTCC CCTGCAAGCA
  CAACTTGAGG TTTGGGCTGG TAACCGCTGC TATAAAAACA GCCTTTTTTC CAGATGTTAA
  AACAAGCCCA GGGCCTCTCA AGTATTTTCT TTGGATGCTT CAATTCCAAC AAGGTGTTAC
  R
  GTAGGGTAGT CCCCACTGCT AATCAAAACC GACCATGATA CCACTTTGGT CTCGATACAA
  TACTGCTTGC TTGATTCTTG CCACACAGGA AGGCTCCGCT GTCCTACATT AAGCCTTCAG
  TGCCTTTAGT GAGGGGTACC TGAAAAATCT TAAAAAAAGG CTTAGCGCCC ACCTCACCCC
  TCCACCCCAA GGCCAACATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401662565	MGP_WTSI_19_5796711	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225288949					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401662565	MGP_WTSI_19_5796711	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5846739 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	within coordinates
Mascrna	Malat1-associated small cytoplasmic RNA	730 bp upstream
Rr543161	regulatory region 543161	743 bp proximal
Rr543162	regulatory region 543162	1849 bp proximal
Tssr5415	transcription start site region 5415	123 bp downstream
Tssr5416	transcription start site region 5416	599 bp downstream
Tssr157645	transcription start site region 157645	330 bp upstream
Tssr157646	transcription start site region 157646	228 bp upstream
Tssr157647	transcription start site region 157647	141 bp upstream
Tssr157648	transcription start site region 157648	within coordinates
Tssr157649	transcription start site region 157649	100 bp downstream
Tssr157650	transcription start site region 157650	159 bp downstream
Tssr157651	transcription start site region 157651	213 bp downstream
Tssr157652	transcription start site region 157652	350 bp downstream
Tssr157653	transcription start site region 157653	467 bp downstream
Tssr157654	transcription start site region 157654	510 bp downstream
Tssr157655	transcription start site region 157655	547 bp downstream
Tssr157656	transcription start site region 157656	577 bp downstream
Tssr157657	transcription start site region 157657	699 bp downstream
Tssr157658	transcription start site region 157658	751 bp downstream
Tssr157659	transcription start site region 157659	854 bp downstream
Tssr157660	transcription start site region 157660	1007 bp downstream
Tssr157661	transcription start site region 157661	1028 bp downstream
Tssr157662	transcription start site region 157662	1133 bp downstream
Tssr157663	transcription start site region 157663	1192 bp downstream
Tssr157664	transcription start site region 157664	1314 bp downstream
Tssr157665	transcription start site region 157665	1321 bp downstream
Tssr157666	transcription start site region 157666	1346 bp downstream
Tssr157667	transcription start site region 157667	1599 bp downstream
Tssr157668	transcription start site region 157668	1646 bp downstream
Tssr157669	transcription start site region 157669	1661 bp downstream
Tssr157670	transcription start site region 157670	1681 bp downstream
Tssr157671	transcription start site region 157671	1698 bp downstream
Tssr157672	transcription start site region 157672	1747 bp downstream
Tssr157673	transcription start site region 157673	1764 bp downstream
Tssr157674	transcription start site region 157674	1794 bp downstream
Tssr157675	transcription start site region 157675	1813 bp downstream
Tssr157676	transcription start site region 157676	1824 bp downstream
Tssr157677	transcription start site region 157677	1846 bp downstream
Tssr157678	transcription start site region 157678	1858 bp downstream
Tssr157679	transcription start site region 157679	1895 bp downstream
Tssr157680	transcription start site region 157680	1950 bp downstream
Tssr157681	transcription start site region 157681	1979 bp downstream
Tssr157682	transcription start site region 157682	1997 bp downstream