rs225295026 SNP Detail

Summary

• ID
  rs225295026
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135962572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT TTTGTTAAAA AAAAAAAAAA
  M
  AAAAAAAAAA ACGTGAGAAA GGTGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	DBA/2J	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SWR/J
ss917723394	MGP_WTSI_5_135933718	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	A	A	C	A	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	DBA/2J	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SWR/J
rs225295026					SNP	C	C	C	C	C	C	C	C	C	A	A	C	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917723394	MGP_WTSI_5_135933718	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135962572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16773	CpG island 16773	220 bp proximal
Gm40346	predicted gene, 40346	within coordinates
Gm57297	predicted gene, 57297	963 bp upstream
Rr378682	regulatory region 378682	31 bp upstream
Rr622478	regulatory region 622478	1005 bp distal
Rr622479	regulatory region 622479	742 bp distal
Rr622480	regulatory region 622480	within coordinates
Rr622481	regulatory region 622481	826 bp proximal
Rr622482	regulatory region 622482	974 bp proximal
Tssr49205	transcription start site region 49205	1371 bp upstream
Tssr53779	transcription start site region 53779	13 bp upstream
Tssr53780	transcription start site region 53780	839 bp downstream
Tssr53781	transcription start site region 53781	872 bp downstream
Tssr53782	transcription start site region 53782	901 bp downstream
Ywhag	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	within coordinates