rs225295646 SNP Detail

Summary

• ID
  rs225295646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:82213724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATGTGGA CATTATATCT
  TCGTGCAAAT TAGGATTACT GGAAAGAGTA CTTTTAATTA AAATTTTAAG AGACACAGAG
  GCAGCATGTG TCTGCCCATG CACACTATAG ATCTGTCAAT ACGAGAAATG TGTTGAACAA
  GGCTAATGTC CGAAAGCACC ATGCATGTTC CCAGCACCCT GATGGCACTT CTCTGAAGAG
  Y
  GAGCGGGTTT TCCTAGCCTA CCTGGCATTC CCAGCCTGTA CACGGGGAGC TTTACCCTTG
  TGACATGGAT TTCCCTGCCT CTTTGTCTCT ACGATGCAGA TTGTATAGAA CCGTTTGTAC
  ACCCTATGGG TTCTTGATGC AACCAGTAAT TTTAAATAAA TAATCTGACC TCTGAGGAGG
  CTGCAGCTAA GCCAACCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362186508	MGP_WTSI_4_81941391	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225295646					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362186508	MGP_WTSI_4_81941391	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82213724 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfib	nuclear factor I/B			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr42222	transcription start site region 42222			1790 bp upstream
Tssr42223	transcription start site region 42223			1590 bp upstream
Tssr42224	transcription start site region 42224			1101 bp upstream
Tssr42225	transcription start site region 42225			1029 bp upstream
Tssr42226	transcription start site region 42226			802 bp upstream
Tssr42227	transcription start site region 42227			761 bp upstream
Tssr42228	transcription start site region 42228			694 bp upstream
Tssr42229	transcription start site region 42229			528 bp upstream
Tssr42230	transcription start site region 42230			97 bp upstream
Tssr42231	transcription start site region 42231			390 bp downstream
Tssr42232	transcription start site region 42232			763 bp downstream
Tssr42233	transcription start site region 42233			1153 bp downstream
Tssr42234	transcription start site region 42234			1189 bp downstream