rs225301781 SNP Detail

Summary

• ID
  rs225301781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4538962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAACAAG CATGTCTGGT
  TAGGAGAGAC TATCAATGGT GGCAGCCAGG TACGTAATTC TCCAAGTATT CCTCATCTTC
  CAAAATATGA TTTTCTTAGC ATCATTTGCT TTTTAATTAC TTGGGCTTTA ACCCTTTACC
  CTCATGAGCT TATTAAAAGA AACTACTCTT TTCACAAATT CCAATTCTAT CCTAGATCAC
  R
  TATTAAAAGA TTGGACTCAG CCACCTAATT CAACACTATT ATTCAAATTT GACTTATGGG
  TCATCATTGG AGACATAGCT AATGCGATTT CATGTAAAGG TGCACCGGCC GGCCCAGAGC
  CCCCCAGCTA TGCATATGTA TTTCAGAATG CGAGCAGCTT TTCTGAATTT TTAATCAAAC
  CTTCCCACTG ATGCTACCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367230135	MGP_WTSI_6_4488962	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225301781					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367230135	MGP_WTSI_6_4488962	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4538962 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	within coordinates
Tssr1769	transcription start site region 1769	982 bp downstream
Tssr1770	transcription start site region 1770	294 bp downstream
Tssr54726	transcription start site region 54726	1164 bp downstream
Tssr54727	transcription start site region 54727	1083 bp downstream
Tssr54728	transcription start site region 54728	1006 bp downstream
Tssr54729	transcription start site region 54729	952 bp downstream
Tssr54730	transcription start site region 54730	317 bp downstream
Tssr54731	transcription start site region 54731	272 bp downstream
Tssr54732	transcription start site region 54732	185 bp downstream
Tssr54733	transcription start site region 54733	505 bp upstream
Tssr54734	transcription start site region 54734	516 bp upstream
Tssr54735	transcription start site region 54735	530 bp upstream
Tssr54736	transcription start site region 54736	554 bp upstream
Tssr54737	transcription start site region 54737	576 bp upstream
Tssr54738	transcription start site region 54738	614 bp upstream
Tssr54739	transcription start site region 54739	629 bp upstream
Tssr54740	transcription start site region 54740	693 bp upstream
Tssr54741	transcription start site region 54741	1044 bp upstream
Tssr54742	transcription start site region 54742	1566 bp upstream
Tssr54743	transcription start site region 54743	1581 bp upstream
Tssr54744	transcription start site region 54744	1612 bp upstream
Tssr54745	transcription start site region 54745	1624 bp upstream
Tssr54746	transcription start site region 54746	1637 bp upstream
Tssr54747	transcription start site region 54747	1668 bp upstream
Tssr54748	transcription start site region 54748	1712 bp upstream
Tssr54749	transcription start site region 54749	1881 bp upstream
Tssr54750	transcription start site region 54750	1894 bp upstream
Tssr54751	transcription start site region 54751	1902 bp upstream
Tssr54752	transcription start site region 54752	1945 bp upstream
Tssr54753	transcription start site region 54753	1967 bp upstream
Tssr59718	transcription start site region 59718	1759 bp downstream
Tssr59719	transcription start site region 59719	1827 bp downstream