rs225309583 SNP Detail

Summary

• ID
  rs225309583
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96141670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGCTGGT TACAGATAGA
  AAAACTACAG AGCATGGGGG GGAAGGTGGG GGGAGGGGTA GTTATCCTAG TTTATCCTCA
  GCTATTTATA TAAATTAATT ACAATGCAGA GATAATTCTG GGATTCAGTT TTTTCTATTT
  AGGAGTTAAA GAAGCAGTTG AAGACATCAG TCATTTTAGA GGTACTTCAT AGTTATTCCT
  Y
  GTGGAAACAA TTCTAGTGGT AGTTTTTACT TTCATTTTTT TCCAATAAAT AAAATAAGGT
  TTCCTCTTAT TAAATATTTT CCCATTTATG AAAACTTTCA AATTGTCAAC AATAAAGTAT
  GCTTCCTCAG AATCTTTAGA AATCAACCTG ACAGACGAAA AAAATTCAGC CTTTGTAGTT
  ATTTCGTTCC TTTTTTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107365	CHEV_9_96160036	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225309583					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96141670 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	383 bp downstream
Tssr86589	transcription start site region 86589	906 bp downstream
Tssr86590	transcription start site region 86590	891 bp downstream
Tssr86591	transcription start site region 86591	832 bp downstream
Tssr86592	transcription start site region 86592	815 bp downstream
Tssr86593	transcription start site region 86593	787 bp downstream
Tssr86594	transcription start site region 86594	604 bp downstream
Tssr86595	transcription start site region 86595	356 bp downstream
Tssr86596	transcription start site region 86596	340 bp downstream