rs225313644 SNP Detail

Summary

• ID
  rs225313644
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38938460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAGACGC CTAACTCTCT
  GGTCTACGTC CAGTTCACTC ATCACGCTAT AGCTGGGGAA AAGGCAGAAA TGAATGTTCT
  AACTAAACAA AGGAATTCGC GATGTTTTTA GAATCAGGGC TCTATTCTTC CTCAGTTTAG
  GGTACAGGCA GTTTACGTCC ATAGGACTTG AATGTGTTGT CTTCTCTATC GCTTTTGATT
  K
  TTTTCTGACC TCACACAAGA AAAGGCAGTA GGACATCCTT CCAGATCCTT TTCTTTGCCC
  CCATCCCTTG GCAAGAAGGA GGAATTAGCT CTGTAACCAG ATCTTCCCAG CTGCATTTAA
  TTTAAGGCAC GAAACCAGCC ACTGTAGCAG CCAGATAGGA TATAAGCAGC AGGGGGCAGT
  GTTGACTCGT GCTTGAACCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357622677	MGP_WTSI_3_38783233	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225313644					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357622677	MGP_WTSI_3_38783233	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38938460 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	671 bp proximal
Gm56780	predicted gene, 56780	1378 bp upstream
Gm65329	predicted gene, 65329	355 bp downstream
Rr575715	regulatory region 575715	994 bp distal
Rr575716	regulatory region 575716	1286 bp distal
Rr575717	regulatory region 575717	within coordinates
Rr575718	regulatory region 575718	162 bp proximal
Rr575719	regulatory region 575719	1225 bp proximal
Rr575720	regulatory region 575720	1791 bp proximal
Tssr28930	transcription start site region 28930	1001 bp upstream
Tssr28931	transcription start site region 28931	1372 bp upstream
Tssr28932	transcription start site region 28932	1399 bp upstream
Tssr28933	transcription start site region 28933	1431 bp upstream
Tssr28934	transcription start site region 28934	1532 bp upstream
Tssr28935	transcription start site region 28935	1565 bp upstream
Tssr28936	transcription start site region 28936	1577 bp upstream