rs225319492 SNP Detail

Summary

• ID
  rs225319492
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156021307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCCTCAA GCATGGCTTC
  AATATCAATA TCGTCTGCCA TTTTCTCTAC TCGCCTGGGG AAGAACAAGA CAGTCCTGTA
  AGTACACCTG CAATTCTGCT AAATAATAAA ATAAGATAAA ATGTCCCCTT GATCTCCCAT
  CCTCAAAGCC TGAGAAAACT CCTTTGAAAG CGCTACGATG GCTAAAATTG TGCGACGCCC
  R
  TCAGACAAGG CTGCCTTGGG TACGCCAAGT GTCACGTTCC TTGTACCTAA GACAGGAGCA
  GGACTCCAGG TCGAATTTCA AAAGCCCGCC CGCGAGCGGC TAAAAGCGCC CCCAGGAAGG
  ATGCAGCGGA GCGCTTCCTC ACCGCACAAA ACCCGCGCTG CCATTTTAGC GGCGGAGGGA
  GACTCCCTCC GCTGGGAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356230727	MGP_WTSI_2_156005123	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225319492					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356230727	MGP_WTSI_2_156005123	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156021307 () rs orientation: forward

Symbol	Name	Function Class
A930012N16Rik	RIKEN cDNA A930012N16 gene	1190 bp upstream
Cpgi12544	CpG island 12544	within coordinates
Gm75045	predicted gene, 75045	211 bp upstream
Rbm39	RNA binding motif protein 39	within coordinates
Rr367341	regulatory region 367341	within coordinates
Rr367342	regulatory region 367342	751 bp upstream
Rr568193	regulatory region 568193	1430 bp distal
Rr568194	regulatory region 568194	within coordinates
Rr568195	regulatory region 568195	183 bp proximal
Rr568196	regulatory region 568196	222 bp proximal
Rr568197	regulatory region 568197	770 bp proximal
Rr568198	regulatory region 568198	1036 bp proximal
Tssr21144	transcription start site region 21144	198 bp upstream
Tssr27042	transcription start site region 27042	1607 bp upstream
Tssr27043	transcription start site region 27043	585 bp downstream
Tssr27044	transcription start site region 27044	748 bp downstream