rs225327355 SNP Detail

Summary

• ID
  rs225327355
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32421260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCTTGGT GTTAAATGCC
  TTTCTCCCTG TCCATCCTTG CCCCCTGCAG CCTCTCCTAC AAGCAACTTC CATGGCCTCT
  CGGGCCACTG CATGATAACA ATCTCCATTC CTCACATGGG ACTTTATTAC ATATACTACT
  ACCTTAAACT CCCTGAGTGC AGAAAGAGAC AGGTCTTGGA GTCTTCCGTT TATATTTTAT
  R
  GTTTTATGTG TATTTGCATG TTGGAATAAA ATCTAAAAGC TGAAAGTAGG GGCCTTACCC
  GCTAGCTCAT ACACATACAT ACACTCGATG TTCCAAATTT GCTGCCCCTG ATCCTACAAC
  TTACTTCAAA CAGCTCAGGC ATTTCCTTCT CTGGCCCAGG AAAAAGCAAG TAATCCCAAG
  ATACTTGTTT CATAGAAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320697916	CHEV_3_32266033	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225327355					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32421260 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	within coordinates
Cpgi13055	CpG island 13055	752 bp distal
Rr77496	regulatory region 77496	259 bp distal
Rr374783	regulatory region 374783	1175 bp downstream
Tssr28744	transcription start site region 28744	1785 bp downstream
Tssr28745	transcription start site region 28745	1758 bp downstream
Tssr32923	transcription start site region 32923	1956 bp upstream
Tssr32924	transcription start site region 32924	1893 bp upstream
Tssr32925	transcription start site region 32925	1685 bp upstream
Tssr32926	transcription start site region 32926	1489 bp upstream
Tssr32927	transcription start site region 32927	1420 bp upstream
Tssr32928	transcription start site region 32928	1198 bp upstream
Zmat3	zinc finger matrin type 3	1446 bp upstream