rs225330906 SNP Detail

Summary

• ID
  rs225330906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115628214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTCTGGC TTACCCTCCT
  TCTCCCGCTG CGGTTGAGCC TCCACCCAGG CCATCGCGAT GACGTTGACT CGATTTGCAT
  AAGAGTCCCC AGCATCCCAA GCGACTGCCG CGTAGTTTGC AAAACACGGA TGTTCGGGCT
  CGAGATAACC CACTGGCAAG AACGTGTCCA CGCAGATAAC CGAGATGGAA CCGCCGGGCT
  Y
  CGCTCCCGTC ACGTGGAGGT CGCGCGTGGA CTGAAGCTCA CCGTGACTGA AATGGGAGTC
  GTCAGCCCTG GGAGGCTGAG CGAGCACGCT TACTCGTCAG CTTTGCGCAG TGGCAGTATC
  GTAGCCAATG AGGTTTATCC GAGGCGCGAT TATTGCTAAT TGAAAACTTT TCCCAATACC
  CCGCCATGAC GACTTGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366357765	MGP_WTSI_5_115940164	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225330906					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366357765	MGP_WTSI_5_115940164	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115628214 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16375	CpG island 16375	within coordinates
Cpgi16376	CpG island 16376	1636 bp proximal
Gm13836	predicted gene 13836	1800 bp downstream
Gm24265	predicted gene, 24265	556 bp downstream
Gm24407	predicted gene, 24407	99 bp upstream
Gm57305	predicted gene, 57305	146 bp upstream
Rr1425	regulatory region 1425	within coordinates
Rr108333	regulatory region 108333	1814 bp distal
Rr124163	regulatory region 124163	within coordinates
Rr124164	regulatory region 124164	1586 bp proximal
Tssr48292	transcription start site region 48292	833 bp downstream
Tssr48293	transcription start site region 48293	697 bp downstream
Tssr48294	transcription start site region 48294	621 bp downstream
Tssr48295	transcription start site region 48295	76 bp upstream
Tssr48296	transcription start site region 48296	171 bp upstream
Tssr48297	transcription start site region 48297	1815 bp upstream
Tssr52808	transcription start site region 52808	1223 bp upstream
Tssr52809	transcription start site region 52809	1206 bp upstream
Tssr52810	transcription start site region 52810	572 bp upstream
Tssr52811	transcription start site region 52811	315 bp upstream
Tssr52812	transcription start site region 52812	202 bp upstream
Tssr52813	transcription start site region 52813	174 bp upstream
Tssr52814	transcription start site region 52814	119 bp upstream
Tssr52815	transcription start site region 52815	30 bp downstream
Tssr52816	transcription start site region 52816	189 bp downstream
Tssr52817	transcription start site region 52817	1731 bp downstream