rs225334958 SNP Detail

Summary

• ID
  rs225334958
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8060041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAACTTCA GGGAACAAAG
  CAGAGATTGT GGCTTCTGTC ACTGCTAAAG GAGAGTCCCA ATTTGAAGCT CTCAATTTTG
  ATTTTCAAGC ACAAGCTCAA TTCCTGGAGT TAAATCCTCA TCCTCCAGTC CTGAAGGAAT
  CCATGAACTT CTCCAGTAAG CATGTGAGAA TGGAGCATGA GGGTGAGATA GTATTTGATG
  R
  AAAGGCCATT GAGGGGAAAT CAGACACAGT CGCAAGTTTA CACACAGAGA AAAATGAAGT
  AGAGTTTAAT AATGGTATGA CTGTCAAAGT AAACAATCAG CTCACCCTTG ACAGTCACAC
  AAAGTACTTC CACAAGTTGA GTGTTCCTAG GCTGGACTTC TCCAGTAAGG CTTCTCTTAA
  TAATGAAATC AAGACACTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385064701	MGP_WTSI_12_8016847	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225334958					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385064701	MGP_WTSI_12_8016847	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8060041 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr3782	transcription start site region 3782	1329 bp downstream
Tssr112643	transcription start site region 112643	1965 bp downstream
Tssr112644	transcription start site region 112644	1751 bp downstream
Tssr112645	transcription start site region 112645	1649 bp downstream
Tssr112646	transcription start site region 112646	1620 bp downstream
Tssr112647	transcription start site region 112647	1448 bp downstream
Tssr112648	transcription start site region 112648	1426 bp downstream
Tssr112649	transcription start site region 112649	944 bp downstream
Tssr112650	transcription start site region 112650	864 bp downstream
Tssr112651	transcription start site region 112651	812 bp downstream
Tssr112652	transcription start site region 112652	782 bp downstream
Tssr112653	transcription start site region 112653	763 bp downstream
Tssr112654	transcription start site region 112654	749 bp downstream
Tssr112655	transcription start site region 112655	726 bp downstream
Tssr112656	transcription start site region 112656	706 bp downstream
Tssr112657	transcription start site region 112657	692 bp downstream
Tssr112658	transcription start site region 112658	659 bp downstream
Tssr112659	transcription start site region 112659	580 bp downstream
Tssr112660	transcription start site region 112660	456 bp downstream
Tssr112661	transcription start site region 112661	221 bp downstream
Tssr112662	transcription start site region 112662	10 bp upstream
Tssr112663	transcription start site region 112663	245 bp upstream
Tssr112664	transcription start site region 112664	270 bp upstream
Tssr112665	transcription start site region 112665	435 bp upstream
Tssr112666	transcription start site region 112666	444 bp upstream
Tssr112667	transcription start site region 112667	491 bp upstream
Tssr112668	transcription start site region 112668	629 bp upstream
Tssr112669	transcription start site region 112669	714 bp upstream
Tssr112670	transcription start site region 112670	767 bp upstream
Tssr112671	transcription start site region 112671	882 bp upstream
Tssr112672	transcription start site region 112672	1461 bp upstream
Tssr112673	transcription start site region 112673	1504 bp upstream
Tssr112674	transcription start site region 112674	1605 bp upstream
Tssr112675	transcription start site region 112675	1632 bp upstream
Tssr112676	transcription start site region 112676	1735 bp upstream
Tssr112677	transcription start site region 112677	1885 bp upstream