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rs225336372 SNP Detail
Summary
  • ID
    rs225336372
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr18:82602725 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTGTTCGACT CCGGAGGTTC
AGGTGCACGG ACACCCTTCC AAGTTCACCC CTACTCCATC CTCAGACTTT TCACGGTGAG
GCACACCCCT CCAGCTTCCG TGGGCACTGC GGATAGACAG GCACACCGCC AAGGAGCCAG
AGAGCATGGC GCAGGGGACT GTGTGGTCCA GGCTTCCTTT GTTTTCTTCC CCCTAAAGAG
Y
TTTGTTTTTC CTAACAGGAT CAGACAGTCT TGGAGTGGCT TATACAACGG GGGCTTGTGG
TATGTGAGCA CAGGCTGGGC AGCTGTGAGA GTCCAGAGTG GGGTGGCCCT GGGGACACTT
CCAGGCCAGC TATCCCCTGC ACCCCACCAG CTGATTTCGA GCGTGGCAGA GGGAAGGAAA
GGGGCGAGTG GGCTGGGCAA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401436743 MGP_WTSI_18_82753992 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225336372 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401436743 MGP_WTSI_18_82753992 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:82602725 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D18Nds1 DNA segment, Chr 18, Nuffield Department of Surgery 1 1860 bp proximal
Gm58829 predicted gene, 58829 22 bp downstream
Mbp myelin basic protein within coordinates
Rr541827 regulatory region 541827 465 bp distal
Tssr152152 transcription start site region 152152 475 bp downstream
Tssr152153 transcription start site region 152153 351 bp downstream
Tssr152154 transcription start site region 152154 328 bp downstream
Tssr152155 transcription start site region 152155 292 bp downstream
Tssr152156 transcription start site region 152156 223 bp downstream
Tssr152157 transcription start site region 152157 145 bp downstream
Tssr152158 transcription start site region 152158 108 bp downstream
Tssr152159 transcription start site region 152159 84 bp downstream
Tssr152160 transcription start site region 152160 38 bp downstream
Tssr152161 transcription start site region 152161 22 bp downstream
Tssr152162 transcription start site region 152162 1 bp downstream
Tssr152163 transcription start site region 152163 7 bp upstream
Tssr152164 transcription start site region 152164 47 bp upstream
Tssr152165 transcription start site region 152165 100 bp upstream
Tssr152166 transcription start site region 152166 166 bp upstream
Tssr152167 transcription start site region 152167 181 bp upstream
Tssr152168 transcription start site region 152168 216 bp upstream
Tssr152169 transcription start site region 152169 277 bp upstream
Tssr152170 transcription start site region 152170 358 bp upstream
Tssr152171 transcription start site region 152171 418 bp upstream
Tssr152172 transcription start site region 152172 525 bp upstream
Tssr152173 transcription start site region 152173 548 bp upstream
Tssr152174 transcription start site region 152174 566 bp upstream
Tssr152175 transcription start site region 152175 589 bp upstream
Tssr152176 transcription start site region 152176 798 bp upstream
Tssr152177 transcription start site region 152177 966 bp upstream
Tssr154083 transcription start site region 154083 370 bp upstream
Tssr154084 transcription start site region 154084 316 bp upstream
Tssr154085 transcription start site region 154085 59 bp upstream
Tssr154086 transcription start site region 154086 468 bp downstream
Tssr154087 transcription start site region 154087 683 bp downstream
Tssr154088 transcription start site region 154088 723 bp downstream
Tssr154089 transcription start site region 154089 834 bp downstream
Tssr154090 transcription start site region 154090 906 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory