rs225345184 SNP Detail

Summary

• ID
  rs225345184
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101897802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATGTAG ATACCCAACC
  TCTGCAGTTC CCACCAAGCA CCAGGGACGA AAGACAAACA CCTTGCCTCA CATCCCCTTC
  CTGATCAAAA TTTAAAAACC AGTAGAGACT TAAGTTAGAC TCGTAGCACT TTTCCCTCCA
  GAATCTTGCC TCTGCCCCCT TCCTTTTCCT AGCAGGCCAA ATGGCCCAAC CTACTCTCCC
  M
  ACTGGTTGGA ACCAGTAAGT GCTAGGAGAC AGGAACCTTA AAGCTAGTTC CCCCTGACCC
  CCCTCCCACA CAACACACCA CTACACACAC ACTCCTAGGC TGCCTTCCTA AGAATCAGGG
  TAGTTTGATT TCCCATGGAC TTTCTCACTA ATCTTATTCT TGTGTCACCC AACCCTGCCT
  GCTACAGACT GCTTCCCCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353641	CHEV_7_109397109	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225345184					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101897802 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	1047 bp proximal
Rhog	ras homolog family member G	within coordinates
Rr652561	regulatory region 652561	1064 bp distal
Rr652562	regulatory region 652562	within coordinates
Rr652563	regulatory region 652563	1483 bp proximal
Tssr2354	transcription start site region 2354	1664 bp upstream
Tssr68327	transcription start site region 68327	837 bp downstream
Tssr68328	transcription start site region 68328	1025 bp upstream
Tssr68329	transcription start site region 68329	1107 bp upstream
Tssr68330	transcription start site region 68330	1625 bp upstream
Tssr73938	transcription start site region 73938	1508 bp upstream
Tssr73939	transcription start site region 73939	767 bp downstream
Tssr73940	transcription start site region 73940	817 bp downstream
Tssr73941	transcription start site region 73941	859 bp downstream
Tssr73942	transcription start site region 73942	947 bp downstream
Tssr73943	transcription start site region 73943	1480 bp downstream
Tssr73944	transcription start site region 73944	1491 bp downstream
Tssr73945	transcription start site region 73945	1532 bp downstream
Tssr73946	transcription start site region 73946	1728 bp downstream
Tssr73947	transcription start site region 73947	1871 bp downstream
Tssr73948	transcription start site region 73948	1896 bp downstream
Tssr73949	transcription start site region 73949	1932 bp downstream
Tssr73950	transcription start site region 73950	1981 bp downstream