rs225354877 SNP Detail

Summary

• ID
  rs225354877
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138101959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCAGACG TTAGCCGGCT
  TAGTACCAGG GATTTCTTTG GAAACGAGAG GAGTGAACAT CAGGAAAAAA ATAAAATTGA
  ATTCTGATAC AATTAACTAT TTTCCCCATT TAAAAGTATC TTAGATTAAA CACTACAAGG
  AGAAATGCCA TCTAGCTGTA ACTTGATAAT CAACTCATGT CTCAAAGAGA AACTACTCCA
  S
  AAATAATTAT TGACCAGACC AGATATGTAA GAAGGACTGA ACCTTCAGTA AGCAGTGCCT
  GCCTGGTCAC CCTGTCCTGA AGGACACAGC ATTTGTAGGA ATTTTATGAA CTGTAACACA
  CGTCTACCTT TTCAAGGCTG TACTCTGTAC CCATCACCCA GGAAGGGCGG TGGCTCTACC
  AGAATTTCCA CAGCAGAATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351608831	MGP_WTSI_1_140070798	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225354877					SNP	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351608831	MGP_WTSI_1_140070798	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138101959 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	within coordinates
Rr396335	regulatory region 396335	1006 bp upstream
Rr396336	regulatory region 396336	1967 bp upstream
Rr419676	regulatory region 419676	1087 bp distal
Rr419677	regulatory region 419677	within coordinates
Rr419678	regulatory region 419678	1036 bp proximal
Tssr233	transcription start site region 233	1397 bp downstream
Tssr9150	transcription start site region 9150	1921 bp downstream
Tssr9151	transcription start site region 9151	1906 bp downstream
Tssr9152	transcription start site region 9152	1490 bp downstream
Tssr9153	transcription start site region 9153	226 bp upstream
Tssr9154	transcription start site region 9154	1407 bp upstream
Tssr9155	transcription start site region 9155	1470 bp upstream
Tssr14018	transcription start site region 14018	61 bp downstream
Tssr14019	transcription start site region 14019	90 bp downstream
Tssr14020	transcription start site region 14020	122 bp downstream
Tssr14021	transcription start site region 14021	960 bp downstream
Tssr14022	transcription start site region 14022	1017 bp downstream
Tssr14023	transcription start site region 14023	1062 bp downstream
Tssr14024	transcription start site region 14024	1405 bp downstream
Tssr14025	transcription start site region 14025	1432 bp downstream
Tssr14026	transcription start site region 14026	1450 bp downstream
Tssr14027	transcription start site region 14027	1471 bp downstream
Tssr14028	transcription start site region 14028	1497 bp downstream
Tssr14029	transcription start site region 14029	1521 bp downstream
Tssr14030	transcription start site region 14030	1675 bp downstream
Tssr14031	transcription start site region 14031	1692 bp downstream