rs225360540 SNP Detail

Summary

• ID
  rs225360540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65369851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGCCTGA ACAGGTGCTT
  CTGTTTTTTG TAAAGAACAG AGTCACGAGA AAGCAAATCT GTCCTGAACA CACTGCCCAT
  GTTTCTTTTC ATCCTGACCA GTTTGGTCAC AGTCTCAGCT AACTTTCTGG GCCACAGATT
  TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TAAGAATGTT TCTCTTGTGA CTTGGAAAAG
  Y
  ATCCGGCTTA AGTGGATGAA AGAGAGCTAG AACAAACTTT CCTTTTCATA CCCTTCACAG
  CTGCTTTAGC TTTGCAGCAG GTTTTTTTTT TTTTTTTTCT TCCTAGCCGT CAGCTGGTCC
  TACGCAACAT TTGGCAACAT TTGGTAACTG TCTCACCTTT CCTCACCACC CAACCAGCAC
  AAGTGTTAGA ATCACCTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377865493	MGP_WTSI_9_65310376	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225360540					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377865493	MGP_WTSI_9_65310376	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65369851 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21949	CpG island 21949	1115 bp distal
Rr401463	regulatory region 401463	1521 bp downstream
Rr681488	regulatory region 681488	1606 bp distal
Rr681489	regulatory region 681489	909 bp distal
Rr681490	regulatory region 681490	within coordinates
Spg21	SPG21, maspardin	within coordinates
Tssr2916	transcription start site region 2916	1652 bp downstream
Tssr85703	transcription start site region 85703	1586 bp downstream
Tssr85704	transcription start site region 85704	1576 bp downstream
Tssr85705	transcription start site region 85705	1218 bp downstream
Tssr85706	transcription start site region 85706	27 bp downstream
Tssr85707	transcription start site region 85707	96 bp upstream
Tssr85708	transcription start site region 85708	226 bp upstream