rs225363522 SNP Detail

Summary

• ID
  rs225363522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:53933404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGCTGGG GCGGGGCGAT
  TGGAGCCAGA GTGTGTGGAG GGGCGGGGCG AGTGGGGGAG GGGCGGGGGG GCGGTGGCAG
  GGGAGCGTCG CTCGGGGAGC GGAGGACGAG GAGGAGGAAG GAGGTGAGCA GGGATGGTGG
  AGTCCGGGCT CCGGACGGCA GCCTGGGGCG GGAGCGGCAC AGGAGCGCCC GTGGGCCGGT
  Y
  CTCTGCTTTC CTGCCTGTCG GGGGGCCCGG CCGGCCGTCG GTAAGGGGAG GCCCACACGT
  CCTGACAGGC GCGAGCCGCC GGAGCCGGGG CGAGGCCTGA GGGGTCGGGG CCCTGGGAGG
  CGCCGCGGCC GCTTTCCGGG GTGCCACGGC CCGGGGCGCC GGAGCCTCGG AGCCGCTGCC
  CGCGCGGGGC CGGCGGGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402802522	MGP_WTSI_19_54019463	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225363522					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402802522	MGP_WTSI_19_54019463	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53933404 () rs orientation: forward

Symbol	Name	Function Class
Bbip1	BBSome interacting protein 1	346 bp upstream
Cpgi11070	CpG island 11070	within coordinates
Rr394562	regulatory region 394562	287 bp downstream
Rr549684	regulatory region 549684	804 bp distal
Rr549685	regulatory region 549685	1061 bp distal
Rr549686	regulatory region 549686	657 bp distal
Rr549687	regulatory region 549687	524 bp distal
Rr549688	regulatory region 549688	83 bp distal
Rr549689	regulatory region 549689	within coordinates
Shoc2	Shoc2, leucine rich repeat scaffold protein	within coordinates
Tssr5553	transcription start site region 5553	709 bp upstream
Tssr157049	transcription start site region 157049	877 bp downstream
Tssr157050	transcription start site region 157050	106 bp downstream
Tssr157051	transcription start site region 157051	66 bp downstream
Tssr157052	transcription start site region 157052	943 bp upstream
Tssr159836	transcription start site region 159836	747 bp upstream
Tssr159837	transcription start site region 159837	718 bp upstream
Tssr159838	transcription start site region 159838	486 bp upstream
Tssr159839	transcription start site region 159839	341 bp upstream