rs225366449 SNP Detail

Summary

• ID
  rs225366449
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51185471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATG AAATTCGTGT GCCCTCTCTT
  K
  TATTTGCTTG ACTTGGACAA ATGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320762241	CHEV_3_51081972	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225366449					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51185471 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930577N17Rik	RIKEN cDNA 4930577N17 gene			within coordinates
Cpgi13132	CpG island 13132			249 bp distal
Elf2	E74-like factor 2			Intron
				Noncoding-Transcript-Variant
Gm64767	predicted gene, 64767			1439 bp downstream
Rr397655	regulatory region 397655			1706 bp downstream
Rr576259	regulatory region 576259			1776 bp distal
Rr576260	regulatory region 576260			693 bp distal
Rr576261	regulatory region 576261			within coordinates
Rr576262	regulatory region 576262			560 bp distal
Tssr29048	transcription start site region 29048			1776 bp downstream
Tssr29049	transcription start site region 29049			1187 bp downstream
Tssr33194	transcription start site region 33194			1990 bp upstream
Tssr33195	transcription start site region 33195			744 bp upstream
Tssr33196	transcription start site region 33196			607 bp upstream
Tssr33197	transcription start site region 33197			565 bp upstream