rs225367530 SNP Detail

Summary

• ID
  rs225367530
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69335091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTCCCAT AGAAAAGGTC
  GCCTACATTT TTAGGTTTTG CTAAAGGTTC CTTTAGAAGC TCTGGACCCA GCTTCTCAGT
  TACTTAGTGT CACCCTTCTG GGGTTAGCTG CATGAGCTCT AACATTAGGA AAGTTGGCAA
  GACTCACAGT GCCCTGGGGC TCCTCCCTTA TACTTGATTT AAAGGGACAC CTAAGTAACT
  W
  CATAATAATT TTGGATTTTA GCCATCACCT GATTTTCCTA TCAATAAAAT GTATTTGGTG
  AATATTATTC CTAATCAGAT GTGAAATGAC TTCCTCTTAT CATCTTTCTG TCCTCTCAGG
  GTAGCCCTTT ACAGTGAGCT TCTTTAACCA CAGCAGGCCT AGCCCTTTGT CCCACAAATG
  AGTTTGCCTA GGGGTAAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375074757	MGP_WTSI_8_71406338	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225367530					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375074757	MGP_WTSI_8_71406338	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69335091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	815 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	within coordinates
Rr664455	regulatory region 664455	1938 bp distal
Rr664456	regulatory region 664456	838 bp distal
Rr664457	regulatory region 664457	337 bp distal
Rr664458	regulatory region 664458	483 bp distal
Rr664459	regulatory region 664459	122 bp proximal
Tssr77601	transcription start site region 77601	1875 bp downstream
Tssr77602	transcription start site region 77602	1797 bp downstream
Tssr77603	transcription start site region 77603	1767 bp downstream
Tssr77604	transcription start site region 77604	1722 bp downstream
Tssr77605	transcription start site region 77605	1709 bp downstream
Tssr77606	transcription start site region 77606	1908 bp upstream
Tssr77607	transcription start site region 77607	1974 bp upstream
Tssr77608	transcription start site region 77608	1995 bp upstream